RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 MRPL45Q9BRJ2 306 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 IFT80Q9P2H3 777 aaPredicted RBP19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 GNPTGQ9UJJ9 305 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 MPP1Q00013 466 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 FAM20CQ8IXL6 584 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 C17orf50Q8WW18 174 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 ROPN1LQ96C74 230 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 CASZ1Q86V15 1759 aa19.48■□□□□ 0.71
CCDC88B-202ENST00000356786 J3QRK9 145 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 IGSF6O95976 241 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 SLC6A2P23975 617 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 PUDPQ08623 228 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 C16orf59Q7L2K0 433 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 ZSCAN2Q7Z7L9 614 aaPredicted RBP19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 FBXL8Q96CD0 374 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 EXOC2Q96KP1 924 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 DMRTB1Q96MA1 342 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 ZYG11BQ9C0D3 744 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 MTPAPQ9NVV4 582 aaKnown RBP eCLIP19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 SLC7A1P30825 629 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 STARP49675 285 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 SLC18A1P54219 525 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 CYP4F8P98187 520 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 CYP2A13Q16696 494 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 CERS5Q8N5B7 392 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 MARCH7Q9H992 704 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 AMHP03971 560 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 GALNT3Q14435 633 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 ZBED5Q49AG3 693 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 LCLAT1Q6UWP7 414 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 OTOP3Q7RTS5 596 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 GPR65Q8IYL9 337 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 SCAIQ8N9R8 606 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 RAET1EQ8TD07 263 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 MCUBQ9NWR8 336 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 PEX16Q9Y5Y5 336 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 CLDN5O00501 218 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 FANCGO15287 622 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 SGTAO43765 313 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 AP2A2O94973 939 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 LPOP22079 712 aaPredicted RBP19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 RHAGQ02094 409 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 TRIM40Q6P9F5 258 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 PGBD3Q8N328 593 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 USP7Q93009 1102 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 KLHL5Q96PQ7 755 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 TRPV5Q9NQA5 729 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 CARD8Q9Y2G2 431 aa19.47■□□□□ 0.71
CCDC88B-202ENST00000356786 PGLSO95336 258 aa19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 AP2A1O95782 977 aa19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 ASLP04424 464 aa19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 MYL9P24844 172 aa19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 GNPDA1P46926 289 aa19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 SLC9B1Q4ZJI4 515 aa19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 IL23RQ5VWK5 629 aa19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 SLC9A4Q6AI14 798 aa19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 TMPRSS11AQ6ZMR5 421 aa19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 ZCCHC2Q9C0B9 1178 aaKnown RBP19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 C6orf183Q5T699 404 aa19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 NEK5Q6P3R8 708 aa19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 CXXC5Q7LFL8 322 aaKnown RBP19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 DQX1Q8TE96 717 aaKnown RBP19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 SLCO2A1Q92959 643 aa19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 C18orf25Q96B23 403 aaPredicted RBP19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 ZNF395Q9H8N7 513 aaPredicted RBP19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 LIN28AQ9H9Z2 209 aaKnown RBP19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 RAB23Q9ULC3 237 aa19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 KCNH4Q9UQ05 1017 aa19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 ARHGAP15Q53QZ3 475 aa19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 FBXO48Q5FWF7 155 aa19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 OR52L1Q8NGH7 329 aa19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 ZNF224Q9NZL3 707 aa19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 VPS4AQ9UN37 437 aa19.46■□□□□ 0.71
CCDC88B-202ENST00000356786 UBXN8O00124 270 aa19.46■□□□□ 0.7
CCDC88B-202ENST00000356786 NR2F1P10589 423 aa19.46■□□□□ 0.7
CCDC88B-202ENST00000356786 GUCA1AP43080 201 aaPredicted RBP19.46■□□□□ 0.7
CCDC88B-202ENST00000356786 IQSEC1Q6DN90 963 aa19.46■□□□□ 0.7
CCDC88B-202ENST00000356786 CNSTQ6PJW8 725 aa19.46■□□□□ 0.7
CCDC88B-202ENST00000356786 SKA1Q96BD8 255 aa19.46■□□□□ 0.7
CCDC88B-202ENST00000356786 ENTPD4Q9Y227 616 aa19.46■□□□□ 0.7
CCDC88B-202ENST00000356786 TULP3O75386 442 aa19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 GCATO75600 419 aa19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 FGF1P05230 155 aa19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 GJB1P08034 283 aa19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 ICAM3P32942 547 aa19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 IL18Q14116 193 aa19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 FAM171A1Q5VUB5 890 aa19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 THOC7Q6I9Y2 204 aaKnown RBP19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 FRMD7Q6ZUT3 714 aa19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 PLEKHH3Q7Z736 793 aa19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 GRPEL2Q8TAA5 225 aa19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 CD320Q9NPF0 282 aa19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 DMAC2Q9NW81 257 aa19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 WDR37Q9Y2I8 494 aa19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 MFHAS1Q9Y4C4 1052 aa19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 GOLGA4Q13439 2230 aaKnown RBP19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 ALDH2P05091 517 aa19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 LGALS2P05162 132 aa19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 FCRL2Q96LA5 508 aaPredicted RBP19.45■□□□□ 0.7
CCDC88B-202ENST00000356786 ZNF358Q9NW07 568 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms