RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 LIPIQ6XZB0 460 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 SRRM1Q8IYB3 904 aaKnown RBP9.18□□□□□ -0.94
USP4-202ENST00000351842 PAFAH2Q99487 392 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 FAM83DQ9H4H8 585 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 RETREG1Q9H6L5 497 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 PLAC1Q9HBJ0 212 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 FSCN3Q9NQT6 498 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 ACSS2Q9NR19 701 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 EIF2B4Q9UI10 523 aaKnown RBP9.18□□□□□ -0.94
USP4-202ENST00000351842 ARIH1Q9Y4X5 557 aaPredicted RBP9.18□□□□□ -0.94
USP4-202ENST00000351842 TRBV23OR9-2A0A075B6M9 112 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 GOLGA6L10A6NI86 522 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 POLR3GO15318 223 aaPredicted RBP9.17□□□□□ -0.94
USP4-202ENST00000351842 RNGTTO60942 597 aaKnown RBP9.17□□□□□ -0.94
USP4-202ENST00000351842 SPAG7O75391 227 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 NDUFS3O75489 264 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 SUN1O94901 812 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 HAUS5O94927 633 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 GYS2P54840 703 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 HNRNPH2P55795 449 aaKnown RBP9.17□□□□□ -0.94
USP4-202ENST00000351842 GPS2Q13227 327 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 FZD5Q13467 585 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 SEMA3AQ14563 771 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 ZNF284Q2VY69 593 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 TTC19Q6DKK2 380 aaPredicted RBP9.17□□□□□ -0.94
USP4-202ENST00000351842 PRR23CQ6ZRP0 262 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 OR4L1Q8NH43 312 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 CFAP61Q8NHU2 1237 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 EDAQ92838 391 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 MRPL40Q9NQ50 206 aaKnown RBP9.17□□□□□ -0.94
USP4-202ENST00000351842 TRPV5Q9NQA5 729 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 EIF2B3Q9NR50 452 aaKnown RBP9.17□□□□□ -0.94
USP4-202ENST00000351842 MBNL1Q9NR56 388 aaKnown RBP9.17□□□□□ -0.94
USP4-202ENST00000351842 SOX13Q9UN79 622 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 ASPMQ8IZT6 3477 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 ZCWPW2A0A1B0GU75 182 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 POM121BA6NF01 834 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 RASGRF2O14827 1237 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 CD3EAPO15446 510 aaKnown RBP9.17□□□□□ -0.94
USP4-202ENST00000351842 FZD6O60353 706 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 TM7SF2O76062 418 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 ALDH1A2O94788 518 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 CYP2A6P11509 494 aaPredicted RBP9.17□□□□□ -0.94
USP4-202ENST00000351842 PAMP19021 973 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 C5AR1P21730 350 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 VIPR1P32241 457 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 PTGER3P43115 390 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 GLRBP48167 497 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 DHPSP49366 369 aaPredicted RBP9.17□□□□□ -0.94
USP4-202ENST00000351842 INPP5AQ14642 412 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 PIM3Q86V86 326 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 SUGP1Q8IWZ8 645 aaKnown RBP9.17□□□□□ -0.94
USP4-202ENST00000351842 VOPP1Q96AW1 172 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 HSPA12BQ96MM6 686 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 PLCD4Q9BRC7 762 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 OSBPL1AQ9BXW6 950 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 CPEB1Q9BZB8 566 aaKnown RBP9.17□□□□□ -0.94
USP4-202ENST00000351842 VPS11Q9H270 941 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 OSGEPL1Q9H4B0 414 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 KCNK9Q9NPC2 374 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 CATSPERZQ9NTU4 200 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 MBD1Q9UIS9 605 aaPredicted RBP9.17□□□□□ -0.94
USP4-202ENST00000351842 COMMD10Q9Y6G5 202 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 SPTBN4Q9H254 2564 aa9.17□□□□□ -0.94
USP4-202ENST00000351842 MAP1BP46821 2468 aaKnown RBP9.16□□□□□ -0.94
USP4-202ENST00000351842 MYLKQ15746 1914 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 A0A087WUV0 522 aaPredicted RBP9.16□□□□□ -0.94
USP4-202ENST00000351842 WNT9AO14904 365 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 RAD51BO15315 384 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 PPFIA2O75334 1257 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 SEMA4FO95754 770 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 ALADP13716 330 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 CREB1P16220 341 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 CHRM3P20309 590 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 BCKDHBP21953 392 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 ARNTP27540 789 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 MMP12P39900 470 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 STARD6P59095 220 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 BOP1Q14137 746 aaKnown RBP9.16□□□□□ -0.94
USP4-202ENST00000351842 TAF1AQ15573 450 aaPredicted RBP9.16□□□□□ -0.94
USP4-202ENST00000351842 FBXO48Q5FWF7 155 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 CWF19L1Q69YN2 538 aaKnown RBP9.16□□□□□ -0.94
USP4-202ENST00000351842 LRRC6Q86X45 466 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 TRAPPC5Q8IUR0 188 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 TTC30BQ8N4P2 665 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 TMEM105Q8N8V8 129 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 ANKRD42Q8N9B4 389 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 ZNF398Q8TD17 642 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 CDKL2Q92772 493 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 ELMO2Q96JJ3 720 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 TUBGCP5Q96RT8 1024 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 EPB41L4BQ9H329 900 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 SMOC1Q9H4F8 434 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 MEI4A8MW99 385 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 H0Y858 1186 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 SRP72O76094 671 aaKnown RBP9.16□□□□□ -0.94
USP4-202ENST00000351842 SYF2O95926 243 aaKnown RBP9.16□□□□□ -0.94
USP4-202ENST00000351842 ADH1BP00325 375 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 CES1P23141 567 aa9.16□□□□□ -0.94
USP4-202ENST00000351842 TSTA3Q13630 321 aaPredicted RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms