RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 DGCR14Q96DF8 476 aaKnown RBP12.8□□□□□ -0.36
CLK3-201ENST00000345005 DNAJC1Q96KC8 554 aaKnown RBP12.8□□□□□ -0.36
CLK3-201ENST00000345005 TBATAQ96M53 351 aa12.8□□□□□ -0.36
CLK3-201ENST00000345005 TSNARE1Q96NA8 513 aa12.8□□□□□ -0.36
CLK3-201ENST00000345005 TUBGCP5Q96RT8 1024 aa12.8□□□□□ -0.36
CLK3-201ENST00000345005 CAB39LQ9H9S4 337 aa12.8□□□□□ -0.36
CLK3-201ENST00000345005 NLE1Q9NVX2 485 aaPredicted RBP12.8□□□□□ -0.36
CLK3-201ENST00000345005 HACD3Q9P035 362 aa12.8□□□□□ -0.36
CLK3-201ENST00000345005 THEGQ9P2T0 379 aa12.8□□□□□ -0.36
CLK3-201ENST00000345005 MSRAQ9UJ68 235 aa12.8□□□□□ -0.36
CLK3-201ENST00000345005 INTS6Q9UL03 887 aaKnown RBP12.8□□□□□ -0.36
CLK3-201ENST00000345005 EMCNQ9ULC0 261 aa12.8□□□□□ -0.36
CLK3-201ENST00000345005 MYO9BQ13459 2157 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.79□□□□□ -0.36
CLK3-201ENST00000345005 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.79□□□□□ -0.36
CLK3-201ENST00000345005 NEDD8-MDP1E9PL57 170 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 K7ERQ8 282 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 SLC22A2O15244 555 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 SMAD6O43541 496 aaKnown RBP12.79□□□□□ -0.36
CLK3-201ENST00000345005 IGSF6O95976 241 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 PROCP04070 461 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 PRKCGP05129 697 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 F7P08709 466 aaPredicted RBP12.79□□□□□ -0.36
CLK3-201ENST00000345005 PIRTP0C851 137 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 STMN1P16949 149 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 VCLP18206 1134 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 LPOP22079 712 aaPredicted RBP12.79□□□□□ -0.36
CLK3-201ENST00000345005 PSMA3P25788 255 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 PBX2P40425 430 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 SLC1A6P48664 564 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 HSPA13P48723 471 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 CSRP3P50461 194 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 ARSDP51689 593 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 CLCN5P51795 746 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 ZNF140P52738 457 aaPredicted RBP12.79□□□□□ -0.36
CLK3-201ENST00000345005 CHN2P52757 468 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 SULT2A1Q06520 285 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 DMC1Q14565 340 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 MMEL1Q495T6 779 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 ATXN7L2Q5T6C5 722 aaPredicted RBP12.79□□□□□ -0.36
CLK3-201ENST00000345005 MRNIPQ6NTE8 343 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 ZFP1Q6P2D0 407 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 C16orf46Q6P387 395 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 ADGRG2Q8IZP9 1017 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 CELF5Q8N6W0 485 aaKnown RBP12.79□□□□□ -0.36
CLK3-201ENST00000345005 ING5Q8WYH8 240 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 ISG20Q96AZ6 181 aaKnown RBP12.79□□□□□ -0.36
CLK3-201ENST00000345005 CDKN2AIPNLQ96HQ2 116 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 SLC2A11Q9BYW1 496 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 CERS4Q9HA82 394 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 ATXN10Q9UBB4 475 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 SPO11Q9Y5K1 396 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 CHD9Q3L8U1 2897 aa12.79□□□□□ -0.36
CLK3-201ENST00000345005 CCDC162PA2VCL2 907 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 CD3EAPO15446 510 aaKnown RBP12.78□□□□□ -0.36
CLK3-201ENST00000345005 DENRO43583 198 aaKnown RBP12.78□□□□□ -0.36
CLK3-201ENST00000345005 FZD6O60353 706 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 S1PR4O95977 384 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 TOP3BO95985 862 aaKnown RBP12.78□□□□□ -0.36
CLK3-201ENST00000345005 GOT2P00505 430 aaKnown RBP12.78□□□□□ -0.36
CLK3-201ENST00000345005 APOA4P06727 396 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 ZCCHC18P0CG32 403 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 TYRP14679 529 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 SAT1P21673 171 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 HLA-FP30511 346 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 ADSLP30566 484 aaPredicted RBP12.78□□□□□ -0.36
CLK3-201ENST00000345005 NRIP1P48552 1158 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 EPHB1P54762 984 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 SLC12A2P55011 1212 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 RAB10P61026 200 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 BCL2L1Q07817 233 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 DLG2Q15700 870 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 RAB30Q15771 203 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 TMEM259Q4ZIN3 620 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 ARMC12Q5T9G4 340 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 SLC41A1Q8IVJ1 513 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 FBXW8Q8N3Y1 598 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 ACVR1CQ8NER5 493 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 MDGA1Q8NFP4 955 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 OR4L1Q8NH43 312 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 ITFG1Q8TB96 612 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 ELMO2Q96JJ3 720 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 RTKNQ9BST9 563 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 TM6SF2Q9BZW4 377 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 LINC00597Q9H2U6 94 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 SFXN1Q9H9B4 322 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 MARK1Q9P0L2 795 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 TMEM216Q9P0N5 145 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 CHD7Q9P2D1 2997 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 SLC25A13Q9UJS0 675 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 MID2Q9UJV3 735 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 PRPF19Q9UMS4 504 aaKnown RBP12.78□□□□□ -0.36
CLK3-201ENST00000345005 HS3ST2Q9Y278 367 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 ACOT9Q9Y305 439 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 PCDHB9Q9Y5E1 797 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 PABPC1P11940 636 aaKnown RBP12.78□□□□□ -0.36
CLK3-201ENST00000345005 OGNP20774 298 aaKnown RBP12.78□□□□□ -0.36
CLK3-201ENST00000345005 GRIA4P48058 902 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 SNRPD1P62314 119 aaKnown RBP12.78□□□□□ -0.36
CLK3-201ENST00000345005 CBX2Q14781 532 aaPredicted RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms