RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 GPR21Q99679 349 aa19.29■□□□□ 0.68
COL9A3-201ENST00000343916 MRPL9Q9BYD2 267 aaKnown RBP19.29■□□□□ 0.68
COL9A3-201ENST00000343916 UTP6Q9NYH9 597 aaKnown RBP19.29■□□□□ 0.68
COL9A3-201ENST00000343916 RAI2Q9Y5P3 530 aa19.29■□□□□ 0.68
COL9A3-201ENST00000343916 CDC7O00311 574 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 PIP5K1BO14986 540 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 CLASP2O75122 1294 aaKnown RBP19.28■□□□□ 0.68
COL9A3-201ENST00000343916 NDUFS3O75489 264 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 TAF1AQ15573 450 aaPredicted RBP19.28■□□□□ 0.68
COL9A3-201ENST00000343916 ICA1LQ8NDH6 482 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 TTC16Q8NEE8 873 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 RHEBL1Q8TAI7 183 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 TWIST2Q8WVJ9 160 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 DCUN1D1Q96GG9 259 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 LRGUKQ96M69 825 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 TMEM175Q9BSA9 504 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 CCDC68Q9H2F9 335 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 SEMA4BQ9NPR2 832 aaPredicted RBP19.28■□□□□ 0.68
COL9A3-201ENST00000343916 CREBZFQ9NS37 354 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 INTS10Q9NVR2 710 aaKnown RBP19.28■□□□□ 0.68
COL9A3-201ENST00000343916 TAS2R13Q9NYV9 303 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 MTRRQ9UBK8 725 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 FKBPLQ9UIM3 349 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 RIMS3Q9UJD0 308 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 RNF112Q9ULX5 631 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 PRORSD1PA6NEY8 169 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 TRIM38O00635 465 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 EEF1DP29692 281 aaKnown RBP19.28■□□□□ 0.68
COL9A3-201ENST00000343916 TUFMP49411 452 aaKnown RBP19.28■□□□□ 0.68
COL9A3-201ENST00000343916 ARF5P84085 180 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 MTA1Q13330 715 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 PLD1Q13393 1074 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 PTPRNQ16849 979 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 KIF19Q2TAC6 998 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 AFTPHQ6ULP2 937 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 RAB44Q7Z6P3 723 aaPredicted RBP19.28■□□□□ 0.68
COL9A3-201ENST00000343916 FUNDC1Q8IVP5 155 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 DDIASQ8IXT1 998 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 ZFAND2BQ8WV99 257 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 BHMTQ93088 406 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 SLC45A3Q96JT2 553 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 PKP2Q99959 881 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 TUBB1Q9H4B7 451 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 TFB2MQ9H5Q4 396 aaKnown RBP19.28■□□□□ 0.68
COL9A3-201ENST00000343916 BTRCQ9Y297 605 aa19.28■□□□□ 0.68
COL9A3-201ENST00000343916 ANKRD36A6QL64 1941 aa19.27■□□□□ 0.68
COL9A3-201ENST00000343916 ILVBLA1L0T0 632 aa19.27■□□□□ 0.68
COL9A3-201ENST00000343916 C2orf81A6NN90 581 aa19.27■□□□□ 0.68
COL9A3-201ENST00000343916 MRASO14807 208 aa19.27■□□□□ 0.68
COL9A3-201ENST00000343916 ECT2LQ008S8 904 aa19.27■□□□□ 0.68
COL9A3-201ENST00000343916 FOLH1Q04609 750 aa19.27■□□□□ 0.68
COL9A3-201ENST00000343916 ADGRE1Q14246 886 aa19.27■□□□□ 0.68
COL9A3-201ENST00000343916 GRB7Q14451 532 aa19.27■□□□□ 0.68
COL9A3-201ENST00000343916 MAPRE2Q15555 327 aa19.27■□□□□ 0.68
COL9A3-201ENST00000343916 USP41Q3LFD5 358 aa19.27■□□□□ 0.68
COL9A3-201ENST00000343916 CXorf57Q6NSI4 855 aaKnown RBP19.27■□□□□ 0.68
COL9A3-201ENST00000343916 KIAA1841Q6NSI8 718 aa19.27■□□□□ 0.68
COL9A3-201ENST00000343916 ISLR2Q6UXK2 745 aa19.27■□□□□ 0.68
COL9A3-201ENST00000343916 DEFB128Q7Z7B8 93 aa19.27■□□□□ 0.68
COL9A3-201ENST00000343916 LRRC43Q8N309 656 aa19.27■□□□□ 0.68
COL9A3-201ENST00000343916 ATP6V1E2Q96A05 226 aa19.27■□□□□ 0.68
COL9A3-201ENST00000343916 BIRC8Q96P09 236 aa19.27■□□□□ 0.68
COL9A3-201ENST00000343916 UNC93B1Q9H1C4 597 aa19.27■□□□□ 0.68
COL9A3-201ENST00000343916 POPDC3Q9HBV1 291 aa19.27■□□□□ 0.68
COL9A3-201ENST00000343916 RIMKLBQ9ULI2 386 aa19.27■□□□□ 0.68
COL9A3-201ENST00000343916 A0A1B0GVM2 712 aa19.27■□□□□ 0.67
COL9A3-201ENST00000343916 DNAJA2O60884 412 aa19.27■□□□□ 0.67
COL9A3-201ENST00000343916 NIPSNAP2O75323 286 aa19.27■□□□□ 0.67
COL9A3-201ENST00000343916 CD160O95971 181 aa19.27■□□□□ 0.67
COL9A3-201ENST00000343916 C1RP00736 705 aa19.27■□□□□ 0.67
COL9A3-201ENST00000343916 F11P03951 625 aa19.27■□□□□ 0.67
COL9A3-201ENST00000343916 HOXB8P17481 243 aaPredicted RBP19.27■□□□□ 0.67
COL9A3-201ENST00000343916 XIAPP98170 497 aa19.27■□□□□ 0.67
COL9A3-201ENST00000343916 PITRM1Q5JRX3 1037 aa19.27■□□□□ 0.67
COL9A3-201ENST00000343916 ADGRF1Q5T601 910 aa19.27■□□□□ 0.67
COL9A3-201ENST00000343916 ZFP1Q6P2D0 407 aa19.27■□□□□ 0.67
COL9A3-201ENST00000343916 KIAA1191Q96A73 305 aa19.27■□□□□ 0.67
COL9A3-201ENST00000343916 ESAMQ96AP7 390 aa19.27■□□□□ 0.67
COL9A3-201ENST00000343916 ASB9Q96DX5 294 aa19.27■□□□□ 0.67
COL9A3-201ENST00000343916 CLSTN3Q9BQT9 956 aa19.27■□□□□ 0.67
COL9A3-201ENST00000343916 GMPR2Q9P2T1 348 aaKnown RBP19.27■□□□□ 0.67
COL9A3-201ENST00000343916 NPEPPSL1A6NEC2 478 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 ANKRD66B4E2M5 251 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 AZIN1O14977 448 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 PEX1O43933 1283 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 NRP2O60462 931 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 KERAO60938 352 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 ECI2O75521 394 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 LINC00032P0C843 101 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 MC4RP32245 332 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 AGTR2P50052 363 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 TRAF2Q12933 501 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 TRIM25Q14258 630 aaKnown RBP19.26■□□□□ 0.67
COL9A3-201ENST00000343916 FBXO39Q8N4B4 442 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 SIDT2Q8NBJ9 832 aaKnown RBP19.26■□□□□ 0.67
COL9A3-201ENST00000343916 PDZD8Q8NEN9 1154 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 STAG3L4Q8TBR4 150 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 NAT14Q8WUY8 206 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 LRCH3Q96II8 777 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 SLC25A23Q9BV35 468 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms