RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 DHRS7Q9Y394 339 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 XKRYO14609 159 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 MYBL2P10244 700 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 CBX5P45973 191 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 ATXN1P54253 815 aaKnown RBP12.59□□□□□ -0.39
SDC3-201ENST00000336798 LRRC73Q5JTD7 316 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 LRRC17Q8N6Y2 441 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 KCT2Q8NC54 265 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 GIPC3Q8TF64 312 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 AP2M1Q96CW1 435 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 WDR18Q9BV38 432 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 TMEM134Q9H6X4 195 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 NECTIN3Q9NQS3 549 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 PGRMC2O15173 223 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 PRMT3O60678 531 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 RGS20O76081 388 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 ARFIP1P53367 373 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 TUBA1BP68363 451 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 CREMQ03060 361 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 CDK18Q07002 472 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 BST1Q10588 318 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 IL18Q14116 193 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 TUBA1AQ71U36 451 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 UNC93AQ86WB7 457 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 CHERPQ8IWX8 916 aaKnown RBP12.59□□□□□ -0.39
SDC3-201ENST00000336798 DEPDC4Q8N2C3 294 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 ANKRD52Q8NB46 1076 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 FBXO15Q8NCQ5 510 aaPredicted RBP12.59□□□□□ -0.39
SDC3-201ENST00000336798 OR5T3Q8NGG3 340 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 METTL21AQ8WXB1 218 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 C1GALT1C1Q96EU7 318 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 GMIPQ9P107 970 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 SIRPGQ9P1W8 387 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 HBS1LQ9Y450 684 aaKnown RBP12.59□□□□□ -0.39
SDC3-201ENST00000336798 CNTNAP1P78357 1384 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 A0A1W2PQ67 120 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 FAM155BO75949 473 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 CDH3P22223 829 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 C17orf64Q86WR6 236 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 ZMIZ2Q8NF64 920 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 APOLD1Q96LR9 279 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 ACE2Q9BYF1 805 aaPredicted RBP12.59□□□□□ -0.39
SDC3-201ENST00000336798 SLC39A8Q9C0K1 460 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 C3orf14Q9HBI5 128 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 MARK1Q9P0L2 795 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 SH3D21A4FU49 640 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 TRIM64CA6NLI5 447 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 TRIM38O00635 465 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 CABYRO75952 493 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 SASH3O75995 380 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 ERBB2P04626 1255 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 IFNA6P05013 189 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 CYP3A4P08684 503 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 GNALP38405 381 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 TIGD2Q4W5G0 525 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 LIPMQ5VYY2 423 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 RTL4Q6ZR62 310 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 C1orf186Q6ZWK4 172 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 CHST9Q7L1S5 443 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 SLC9A9Q8IVB4 645 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 MSL3Q8N5Y2 521 aaKnown RBP12.59□□□□□ -0.39
SDC3-201ENST00000336798 HIPK3Q9H422 1215 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 DPEP2Q9H4A9 486 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 DNAAF2Q9NVR5 837 aaKnown RBP12.59□□□□□ -0.39
SDC3-201ENST00000336798 KIAA1522Q9P206 1035 aaPredicted RBP12.59□□□□□ -0.39
SDC3-201ENST00000336798 TBC1D24Q9ULP9 559 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 COMMD3-BMI1R4GMX3 469 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 SPHKAPQ2M3C7 1700 aa12.59□□□□□ -0.39
SDC3-201ENST00000336798 UNC13BO14795 1591 aa12.58□□□□□ -0.39
SDC3-201ENST00000336798 RGSL1A5PLK6 1076 aa12.58□□□□□ -0.39
SDC3-201ENST00000336798 C9JVG2 144 aa12.58□□□□□ -0.39
SDC3-201ENST00000336798 CCL22O00626 93 aa12.58□□□□□ -0.39
SDC3-201ENST00000336798 CDH5P33151 784 aaPredicted RBP12.58□□□□□ -0.39
SDC3-201ENST00000336798 SMIM11AP58511 58 aa12.58□□□□□ -0.39
SDC3-201ENST00000336798 ADAM17P78536 824 aa12.58□□□□□ -0.39
SDC3-201ENST00000336798 MRPS5P82675 430 aaKnown RBP12.58□□□□□ -0.39
SDC3-201ENST00000336798 UGCGQ16739 394 aa12.58□□□□□ -0.39
SDC3-201ENST00000336798 DACT2Q5SW24 774 aa12.58□□□□□ -0.39
SDC3-201ENST00000336798 TREML2Q5T2D2 321 aa12.58□□□□□ -0.39
SDC3-201ENST00000336798 CPTPQ5TA50 214 aa12.58□□□□□ -0.39
SDC3-201ENST00000336798 DCLRE1AQ6PJP8 1040 aa12.58□□□□□ -0.39
SDC3-201ENST00000336798 NIPA1Q7RTP0 329 aa12.58□□□□□ -0.39
SDC3-201ENST00000336798 C3orf18Q9UK00 162 aa12.58□□□□□ -0.39
SDC3-201ENST00000336798 A0A1W2PPM1 405 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 ENTPD5O75356 428 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 IL12AP29459 219 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 ACLYP53396 1101 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 TAS2R40P59535 323 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 DENND5AQ6IQ26 1287 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 SNX20Q7Z614 316 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 CFAP206Q8IYR0 622 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 RBFAQ8N0V3 343 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 AGAP11Q8TF27 550 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 PTCD3Q96EY7 689 aaKnown RBP12.58□□□□□ -0.4
SDC3-201ENST00000336798 GSDMCQ9BYG8 508 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 ELOVL2Q9NXB9 296 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 TMCO1Q9UM00 188 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 TIMM22Q9Y584 194 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 AXIN1O15169 862 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 IFNGP01579 166 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms