RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 NOD2Q9HC29 1040 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 MAGEE1Q9HCI5 957 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 KAT7O95251 611 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 FYNP06241 537 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 CCND1P24385 295 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 TLX1P31314 330 aaPredicted RBP6.84□□□□□ -1.31
SF3B1-201ENST00000335508 S100A3P33764 101 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 SLC1A6P48664 564 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 AFF1P51825 1210 aaKnown RBP6.84□□□□□ -1.31
SF3B1-201ENST00000335508 SATB1Q01826 763 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 CBX2Q14781 532 aaPredicted RBP6.84□□□□□ -1.31
SF3B1-201ENST00000335508 MYLK3Q32MK0 819 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 AGKQ53H12 422 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 SGO1Q5FBB7 561 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 LINGO4Q6UY18 593 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 GDPD4Q6W3E5 623 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 ING5Q8WYH8 240 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 KLHL32Q96NJ5 620 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 CCDC134Q9H6E4 229 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 ZNF446Q9NWS9 450 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 COPG2Q9UBF2 871 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 CYTH4Q9UIA0 394 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 FKBPLQ9UIM3 349 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 TNRC6CQ9HCJ0 1690 aaKnown RBP6.84□□□□□ -1.31
SF3B1-201ENST00000335508 MYH11P35749 1972 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 FAM159BA6NKW6 160 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 AP2A2O94973 939 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 HLA-DQB2P05538 268 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 ITGB1P05556 798 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 CHRNA4P43681 627 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 CLCN4P51793 760 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 STC1P52823 247 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 GDF10P55107 478 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 DPYSQ14117 519 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 HECTD2Q5U5R9 776 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 PAQR9Q6ZVX9 377 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 CBARPQ8N350 705 aaPredicted RBP6.84□□□□□ -1.31
SF3B1-201ENST00000335508 TEX9Q8N6V9 391 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 OR52K2Q8NGK3 314 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 FEM1AQ9BSK4 669 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 TFB2MQ9H5Q4 396 aaKnown RBP6.84□□□□□ -1.31
SF3B1-201ENST00000335508 NUDT4Q9NZJ9 180 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 WNT6Q9Y6F9 365 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 SSC5DA1L4H1 1573 aa6.84□□□□□ -1.32
SF3B1-201ENST00000335508 MYO18BQ8IUG5 2567 aa6.84□□□□□ -1.32
SF3B1-201ENST00000335508 LCHNA4D1U4 455 aa6.84□□□□□ -1.32
SF3B1-201ENST00000335508 H0Y3Z8 333 aa6.84□□□□□ -1.32
SF3B1-201ENST00000335508 MRASO14807 208 aa6.84□□□□□ -1.32
SF3B1-201ENST00000335508 LIN7AO14910 233 aaPredicted RBP6.84□□□□□ -1.32
SF3B1-201ENST00000335508 HCRTO43612 131 aa6.84□□□□□ -1.32
SF3B1-201ENST00000335508 BEST1O76090 585 aa6.84□□□□□ -1.32
SF3B1-201ENST00000335508 ME2P23368 584 aa6.84□□□□□ -1.32
SF3B1-201ENST00000335508 CCNFP41002 786 aa6.84□□□□□ -1.32
SF3B1-201ENST00000335508 CCSAPQ6IQ19 270 aaPredicted RBP6.84□□□□□ -1.32
SF3B1-201ENST00000335508 TRMT10BQ6PF06 316 aaKnown RBP6.84□□□□□ -1.32
SF3B1-201ENST00000335508 CPNE8Q86YQ8 564 aa6.84□□□□□ -1.32
SF3B1-201ENST00000335508 CNTD1Q8N815 330 aa6.84□□□□□ -1.32
SF3B1-201ENST00000335508 NAT16Q8N8M0 369 aa6.84□□□□□ -1.32
SF3B1-201ENST00000335508 TERB1Q8NA31 727 aa6.84□□□□□ -1.32
SF3B1-201ENST00000335508 RPL10LQ96L21 214 aaKnown RBP6.84□□□□□ -1.32
SF3B1-201ENST00000335508 CCDC28BQ9BUN5 200 aa6.84□□□□□ -1.32
SF3B1-201ENST00000335508 TDRD1Q9BXT4 1180 aaKnown RBP6.84□□□□□ -1.32
SF3B1-201ENST00000335508 OBP2AQ9NY56 170 aa6.84□□□□□ -1.32
SF3B1-201ENST00000335508 ENOPH1Q9UHY7 261 aa6.84□□□□□ -1.32
SF3B1-201ENST00000335508 F8W810 466 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 GSRP00390 522 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 C8GP07360 202 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 IVDP26440 423 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 ZBTB17Q13105 803 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 USP4Q13107 963 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 FLOT2Q14254 428 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 PHKG1Q16816 387 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.83□□□□□ -1.32
SF3B1-201ENST00000335508 FAM151BQ6UXP7 276 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.83□□□□□ -1.326e-9■■■■■ 48.8
SF3B1-201ENST00000335508 NXPE1Q8N323 547 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 OR6K2Q8NGY2 324 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 SERAC1Q96JX3 654 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 GPR21Q99679 349 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 NEUROG2Q9H2A3 272 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 TMLHEQ9NVH6 421 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 ZDHHC3Q9NYG2 299 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 MYO18AQ92614 2054 aaKnown RBP6.83□□□□□ -1.32
SF3B1-201ENST00000335508 RECQL5O94762 991 aaPredicted RBP6.83□□□□□ -1.32
SF3B1-201ENST00000335508 ABLIM3O94929 683 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 CTPS1P17812 591 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 GNPDA1P46926 289 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 MGAT3Q09327 533 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 KIAA0319Q5VV43 1072 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 GPR180Q86V85 440 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 FNDC5Q8NAU1 212 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 OXNAD1Q96HP4 312 aaPredicted RBP6.83□□□□□ -1.32
SF3B1-201ENST00000335508 CNDP1Q96KN2 507 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 PEBP4Q96S96 227 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.83□□□□□ -1.32
SF3B1-201ENST00000335508 CROTQ9UKG9 612 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 UBR3Q6ZT12 1888 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 TGM5O43548 720 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 TCF4P15884 667 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 ABCG1P45844 678 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms