RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 PKD2L2Q9NZM6 624 aa15.75■□□□□ 0.11
CLN3-201ENST00000333496 MOSPD1Q9UJG1 213 aa15.75■□□□□ 0.11
CLN3-201ENST00000333496 CNOT6Q9ULM6 557 aaKnown RBP15.75■□□□□ 0.11
CLN3-201ENST00000333496 CHD8Q9HCK8 2581 aa15.75■□□□□ 0.11
CLN3-201ENST00000333496 FADS2P1A8MWK0 482 aa15.74■□□□□ 0.11
CLN3-201ENST00000333496 ANXA6P08133 673 aa15.74■□□□□ 0.11
CLN3-201ENST00000333496 PSMB4P28070 264 aa15.74■□□□□ 0.11
CLN3-201ENST00000333496 ILKQ13418 452 aa15.74■□□□□ 0.11
CLN3-201ENST00000333496 SLC1A5Q15758 541 aa15.74■□□□□ 0.11
CLN3-201ENST00000333496 TRIM74Q86UV6 250 aa15.74■□□□□ 0.11
CLN3-201ENST00000333496 SLC35F3Q8IY50 421 aa15.74■□□□□ 0.11
CLN3-201ENST00000333496 GPR26Q8NDV2 337 aa15.74■□□□□ 0.11
CLN3-201ENST00000333496 SPATA13Q96N96 652 aa15.74■□□□□ 0.11
CLN3-201ENST00000333496 FAM83DQ9H4H8 585 aa15.74■□□□□ 0.11
CLN3-201ENST00000333496 SLC17A4Q9Y2C5 497 aa15.74■□□□□ 0.11
CLN3-201ENST00000333496 ST14Q9Y5Y6 855 aa15.74■□□□□ 0.11
CLN3-201ENST00000333496 RGSL1A5PLK6 1076 aa15.73■□□□□ 0.11
CLN3-201ENST00000333496 FAM149AA5PLN7 773 aa15.73■□□□□ 0.11
CLN3-201ENST00000333496 C1QTNF9BB2RNN3 333 aa15.73■□□□□ 0.11
CLN3-201ENST00000333496 INPP4BO15327 924 aa15.73■□□□□ 0.11
CLN3-201ENST00000333496 C1QTNF9P0C862 333 aa15.73■□□□□ 0.11
CLN3-201ENST00000333496 GDF10P55107 478 aa15.73■□□□□ 0.11
CLN3-201ENST00000333496 OLIG2Q13516 323 aa15.73■□□□□ 0.11
CLN3-201ENST00000333496 SEL1L2Q5TEA6 688 aa15.73■□□□□ 0.11
CLN3-201ENST00000333496 ITPRIPL1Q6GPH6 555 aa15.73■□□□□ 0.11
CLN3-201ENST00000333496 CCDC70Q6NSX1 233 aa15.73■□□□□ 0.11
CLN3-201ENST00000333496 LVRNQ6Q4G3 990 aa15.73■□□□□ 0.11
CLN3-201ENST00000333496 CCNI2Q6ZMN8 369 aaPredicted RBP15.73■□□□□ 0.11
CLN3-201ENST00000333496 SDR16C5Q8N3Y7 309 aa15.73■□□□□ 0.11
CLN3-201ENST00000333496 SLC25A41Q8N5S1 370 aa15.73■□□□□ 0.11
CLN3-201ENST00000333496 SCARF2Q96GP6 870 aaPredicted RBP15.73■□□□□ 0.11
CLN3-201ENST00000333496 HIC2Q96JB3 615 aa15.73■□□□□ 0.11
CLN3-201ENST00000333496 FERMT1Q9BQL6 677 aa15.73■□□□□ 0.11
CLN3-201ENST00000333496 GPR63Q9BZJ6 419 aa15.73■□□□□ 0.11
CLN3-201ENST00000333496 CARS2Q9HA77 564 aaKnown RBP15.73■□□□□ 0.11
CLN3-201ENST00000333496 SUFUQ9UMX1 484 aa15.73■□□□□ 0.11
CLN3-201ENST00000333496 TMEM98Q9Y2Y6 226 aa15.73■□□□□ 0.11
CLN3-201ENST00000333496 DMXL2Q8TDJ6 3036 aa15.73■□□□□ 0.11
CLN3-201ENST00000333496 ACACBO00763 2458 aa15.73■□□□□ 0.11
CLN3-201ENST00000333496 CEP295Q9C0D2 2601 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 EME2A4GXA9 379 aaPredicted RBP15.72■□□□□ 0.11
CLN3-201ENST00000333496 C5orf60A6NFR6 353 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 ANXA9O76027 345 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 AGTP01019 485 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 SLC4A1P02730 911 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 PYGLP06737 847 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 CDK4P11802 303 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 ADRA1AP35348 466 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 GEMP55040 296 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 RPS6KA1Q15418 735 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 GUSBP11Q6P575 273 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 DOK6Q6PKX4 331 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 GKN2Q86XP6 184 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 SLC13A5Q86YT5 568 aaPredicted RBP15.72■□□□□ 0.11
CLN3-201ENST00000333496 KLHDC8BQ8IXV7 354 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 GALNT15Q8N3T1 639 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 TTC30BQ8N4P2 665 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 FAM71DQ8N9W8 422 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 ATG4AQ8WYN0 398 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 TMEM121Q9BTD3 319 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 TLR10Q9BXR5 811 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 CARD9Q9H257 536 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 NFKBIL1Q9UBC1 381 aaPredicted RBP15.72■□□□□ 0.11
CLN3-201ENST00000333496 DOLKQ9UPQ8 538 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 PCYT1BQ9Y5K3 369 aaPredicted RBP15.72■□□□□ 0.11
CLN3-201ENST00000333496 OAS3Q9Y6K5 1087 aaKnown RBP15.72■□□□□ 0.11
CLN3-201ENST00000333496 STK10O94804 968 aaKnown RBP15.72■□□□□ 0.11
CLN3-201ENST00000333496 IVLP07476 585 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 BPIP17213 487 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 HLA-DPA1P20036 260 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 HMGCLP35914 325 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 DUSP3P51452 185 aaPredicted RBP15.72■□□□□ 0.11
CLN3-201ENST00000333496 DCDC1P59894 354 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 INSM1Q01101 510 aaPredicted RBP15.72■□□□□ 0.11
CLN3-201ENST00000333496 RANBP10Q6VN20 620 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 TMPRSS12Q86WS5 348 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 NRROSQ86YC3 692 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 SFTPA2Q8IWL1 248 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 TRIM58Q8NG06 486 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 IFI44Q8TCB0 444 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 GPBAR1Q8TDU6 330 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 ALS2CR12Q96Q35 445 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 SRPK1Q96SB4 655 aaKnown RBP15.72■□□□□ 0.11
CLN3-201ENST00000333496 FICDQ9BVA6 458 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 FSD1LQ9BXM9 530 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 SUDS3Q9H7L9 328 aaPredicted RBP15.72■□□□□ 0.11
CLN3-201ENST00000333496 SIRPGQ9P1W8 387 aa15.72■□□□□ 0.11
CLN3-201ENST00000333496 MAP1BP46821 2468 aaKnown RBP15.72■□□□□ 0.11
CLN3-201ENST00000333496 UNC13CQ8NB66 2214 aa15.71■□□□□ 0.11
CLN3-201ENST00000333496 CELSR3Q9NYQ7 3312 aa15.71■□□□□ 0.11
CLN3-201ENST00000333496 USP27XA6NNY8 438 aa15.71■□□□□ 0.11
CLN3-201ENST00000333496 CASC3O15234 703 aaKnown RBP15.71■□□□□ 0.11
CLN3-201ENST00000333496 ATP1A1P05023 1023 aaKnown RBP15.71■□□□□ 0.11
CLN3-201ENST00000333496 FGF1P05230 155 aa15.71■□□□□ 0.11
CLN3-201ENST00000333496 GP1BAP07359 652 aa15.71■□□□□ 0.11
CLN3-201ENST00000333496 GNPDA1P46926 289 aa15.71■□□□□ 0.11
CLN3-201ENST00000333496 MSLNQ13421 630 aaPredicted RBP15.71■□□□□ 0.11
CLN3-201ENST00000333496 CAMK2BQ13554 666 aa15.71■□□□□ 0.11
CLN3-201ENST00000333496 NR0B2Q15466 257 aa15.71■□□□□ 0.11
CLN3-201ENST00000333496 OASLQ15646 514 aaKnown RBP15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms