RNA–Protein interactions for RNA: ENST00000325599.12

SHQ1-201, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHQ1, Length 2,879 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-201ENST00000325599 MAPRE2Q15555 327 aa16.32■□□□□ 0.2
SHQ1-201ENST00000325599 SLC44A4Q53GD3 710 aa16.32■□□□□ 0.2
SHQ1-201ENST00000325599 RTP2Q5QGT7 225 aa16.32■□□□□ 0.2
SHQ1-201ENST00000325599 PAQR3Q6TCH7 311 aa16.32■□□□□ 0.2
SHQ1-201ENST00000325599 CLYBLQ8N0X4 340 aa16.32■□□□□ 0.2
SHQ1-201ENST00000325599 FAM110BQ8TC76 370 aa16.32■□□□□ 0.2
SHQ1-201ENST00000325599 LRTOMTQ8WZ04 291 aa16.32■□□□□ 0.2
SHQ1-201ENST00000325599 SLCO4A1Q96BD0 722 aa16.32■□□□□ 0.2
SHQ1-201ENST00000325599 ZBED2Q9BTP6 218 aa16.32■□□□□ 0.2
SHQ1-201ENST00000325599 SPAG4Q9NPE6 437 aa16.32■□□□□ 0.2
SHQ1-201ENST00000325599 OLA1Q9NTK5 396 aaKnown RBP16.32■□□□□ 0.2
SHQ1-201ENST00000325599 GALPQ9UBC7 116 aa16.32■□□□□ 0.2
SHQ1-201ENST00000325599 SUCOQ9UBS9 1254 aaKnown RBP16.32■□□□□ 0.2
SHQ1-201ENST00000325599 SARDHQ9UL12 918 aa16.32■□□□□ 0.2
SHQ1-201ENST00000325599 CHD5Q8TDI0 1954 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 SERPINF2P08697 491 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 GPX3P22352 226 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 STC1P52823 247 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 YBEYP58557 167 aaPredicted RBP16.31■□□□□ 0.2
SHQ1-201ENST00000325599 ECT2LQ008S8 904 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 KIF19Q2TAC6 998 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 SETMARQ53H47 684 aaPredicted RBP16.31■□□□□ 0.2
SHQ1-201ENST00000325599 TAS1R1Q7RTX1 841 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 TMEM173Q86WV6 379 aaPredicted RBP16.31■□□□□ 0.2
SHQ1-201ENST00000325599 ATOH8Q96SQ7 321 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 SLC25A23Q9BV35 468 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 TUBB1Q9H4B7 451 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 INIPQ9NRY2 104 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 EPS15L1Q9UBC2 864 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 CD300AQ9UGN4 299 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 BTRCQ9Y297 605 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 MED16Q9Y2X0 877 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 AP4S1Q9Y587 144 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 SQORQ9Y6N5 450 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 ZFP37Q9Y6Q3 630 aaPredicted RBP16.31■□□□□ 0.2
SHQ1-201ENST00000325599 GFAPP14136 432 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 CST5P28325 142 aaPredicted RBP16.31■□□□□ 0.2
SHQ1-201ENST00000325599 PSMD8P48556 350 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 SLC7A2P52569 658 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 NFKB2Q00653 900 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 C6orf10Q5SRN2 563 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 IYDQ6PHW0 289 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 ZNF554Q86TJ5 538 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 DDIASQ8IXT1 998 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 GPR150Q8NGU9 434 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 TRIB3Q96RU7 358 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 AARSD1Q9BTE6 412 aaKnown RBP16.31■□□□□ 0.2
SHQ1-201ENST00000325599 MARCH5Q9NX47 278 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 CROTQ9UKG9 612 aa16.31■□□□□ 0.2
SHQ1-201ENST00000325599 FNDC3AQ9Y2H6 1198 aaKnown RBP16.31■□□□□ 0.2
SHQ1-201ENST00000325599 F5H5T6 163 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 LINC00032P0C843 101 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 VARSP26640 1264 aaKnown RBP16.3■□□□□ 0.2
SHQ1-201ENST00000325599 MAPKAPK2P49137 400 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 HPCAP84074 193 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 OR4K2Q8NGD2 314 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 TWIST2Q8WVJ9 160 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 RMDN1Q96DB5 314 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 DDX18Q9NVP1 670 aaKnown RBP16.3■□□□□ 0.2
SHQ1-201ENST00000325599 RAB26Q9ULW5 256 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 TET1Q8NFU7 2136 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 NR5A2O00482 541 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 ADARP55265 1226 aaKnown RBP16.3■□□□□ 0.2
SHQ1-201ENST00000325599 RPL26P61254 145 aaKnown RBP16.3■□□□□ 0.2
SHQ1-201ENST00000325599 MYBPC1Q00872 1141 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 RHDQ02161 417 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 GNA12Q03113 381 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 VPS26BQ4G0F5 336 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 PRSS55Q6UWB4 352 aaPredicted RBP16.3■□□□□ 0.2
SHQ1-201ENST00000325599 AMIGO2Q86SJ2 522 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 TMEM126BQ8IUX1 230 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 MDGA1Q8NFP4 955 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 NAT14Q8WUY8 206 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 EME1Q96AY2 570 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 TRIM8Q9BZR9 551 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 SEMA4BQ9NPR2 832 aaPredicted RBP16.3■□□□□ 0.2
SHQ1-201ENST00000325599 TMEM181Q9P2C4 612 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 MAP10Q9P2G4 905 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 TMEM98Q9Y2Y6 226 aa16.3■□□□□ 0.2
SHQ1-201ENST00000325599 A0A0J9YYE9 177 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 NCF1BA6NI72 391 aaPredicted RBP16.29■□□□□ 0.2
SHQ1-201ENST00000325599 NCF1CA8MVU1 366 aaPredicted RBP16.29■□□□□ 0.2
SHQ1-201ENST00000325599 AZIN1O14977 448 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 CLASP2O75122 1294 aaKnown RBP16.29■□□□□ 0.2
SHQ1-201ENST00000325599 RHOBTB1O94844 696 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 GJB5O95377 273 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 NDST3O95803 873 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 EPOP01588 193 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 CAPNS1P04632 268 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 C8BP07358 591 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 NCF1P14598 390 aaPredicted RBP16.29■□□□□ 0.2
SHQ1-201ENST00000325599 ZNF26P17031 533 aaPredicted RBP16.29■□□□□ 0.2
SHQ1-201ENST00000325599 ATF6P18850 670 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 SUOXP51687 545 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 GPR17Q13304 367 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 ABI1Q8IZP0 508 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 COQ10BQ9H8M1 238 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 ANKRD36A6QL64 1941 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 C7orf72A4D263 438 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 OR6C75A6NL08 312 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms