RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 HPF1Q9NWY4 346 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 ADGRE2Q9UHX3 823 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 RBMX2Q9Y388 322 aaKnown RBP10.36□□□□□ -0.75
CLIP1-201ENST00000302528 AP4B1Q9Y6B7 739 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 OR2AT4A6NND4 320 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 FSBPO95073 299 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 TRBC1P01850 177 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 MTHFD1P11586 935 aaKnown RBP10.36□□□□□ -0.75
CLIP1-201ENST00000302528 NT5EP21589 574 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 ALAS2P22557 587 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 AQP1P29972 269 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 OR3A3P47888 321 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 OR3A2P47893 321 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 RNF43Q68DV7 783 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 ALG1LQ6GMV1 187 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 ACER1Q8TDN7 264 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 ARHGAP20Q9P2F6 1191 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 MED31Q9Y3C7 131 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 TRPV2Q9Y5S1 764 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 MAP2P11137 1827 aaKnown RBP10.36□□□□□ -0.75
CLIP1-201ENST00000302528 ZNF609O15014 1411 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 C5orf51A6NDU8 294 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 ANXA2P2A6NMY6 339 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 ANXA2P07355 339 aaKnown RBP10.36□□□□□ -0.75
CLIP1-201ENST00000302528 SP100P23497 879 aaPredicted RBP10.36□□□□□ -0.75
CLIP1-201ENST00000302528 ANTXR2P58335 489 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 ATP6V0D1P61421 351 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 VLDLRP98155 873 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 TROAPQ12815 778 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 UBAP2LQ14157 1087 aaKnown RBP10.36□□□□□ -0.75
CLIP1-201ENST00000302528 ALG10Q5BKT4 473 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 FRMD7Q6ZUT3 714 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 PIWIL4Q7Z3Z4 852 aaKnown RBP10.36□□□□□ -0.75
CLIP1-201ENST00000302528 METTL3Q86U44 580 aaKnown RBP10.36□□□□□ -0.75
CLIP1-201ENST00000302528 LINGO1Q96FE5 620 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 GAL3ST1Q99999 423 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 KIAA1683Q9H0B3 1180 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 SGK2Q9HBY8 427 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 CNOT6Q9ULM6 557 aaKnown RBP10.36□□□□□ -0.75
CLIP1-201ENST00000302528 RAP2CQ9Y3L5 183 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 VIRMAQ69YN4 1812 aaKnown RBP10.36□□□□□ -0.75
CLIP1-201ENST00000302528 SLC22A3O75751 556 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 FAM153BP0C7A2 387 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 CTPS1P17812 591 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 PLCZ1Q86YW0 608 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 NRSN1Q8IZ57 195 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 ZNF366Q8N895 744 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 OR2T12Q8NG77 320 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 ELMO3Q96BJ8 720 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 C12orf66Q96MD2 445 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 ABI3Q9P2A4 366 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 DMTF1Q9Y222 760 aa10.36□□□□□ -0.75
CLIP1-201ENST00000302528 CARNS1A5YM72 827 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 DDX3YO15523 660 aaKnown RBP10.35□□□□□ -0.75
CLIP1-201ENST00000302528 TLX3O43711 291 aaPredicted RBP10.35□□□□□ -0.75
CLIP1-201ENST00000302528 CCNB1P14635 433 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 CXCR3P49682 368 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 SCN1BQ07699 218 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 PPP3CAQ08209 521 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 SF1Q15637 639 aaKnown RBP10.35□□□□□ -0.75
CLIP1-201ENST00000302528 TTI2Q6NXR4 508 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 THAP5Q7Z6K1 395 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 PHYKPLQ8IUZ5 450 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 BEND7Q8N7W2 519 aaPredicted RBP10.35□□□□□ -0.75
CLIP1-201ENST00000302528 C1orf216Q8TAB5 229 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 HM13Q8TCT9 377 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 XAGE5Q8WWM1 108 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 CLP1Q92989 425 aaKnown RBP10.35□□□□□ -0.75
CLIP1-201ENST00000302528 TOP1MTQ969P6 601 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 SEMA3CQ99985 751 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 ZYG11BQ9C0D3 744 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 L2HGDHQ9H9P8 463 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 PDP1Q9P0J1 537 aaPredicted RBP10.35□□□□□ -0.75
CLIP1-201ENST00000302528 TBC1D3DA0A087WVF3 549 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 TBC1D3IA0A087WXS9 549 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 TBC1D3EA0A087X179 549 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 TBC1D3KA0A087X1G2 549 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 ATP6AP2A0A1C7CYW4 349 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 TBC1D3FA6NER0 549 aaPredicted RBP10.35□□□□□ -0.75
CLIP1-201ENST00000302528 TBC1D3LB9A6J9 549 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 NUAK1O60285 661 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 ATP6AP2O75787 350 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 RASGRP1O95267 797 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 C22orf31O95567 290 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 TBC1D3HP0C7X1 549 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 ZNF823P16415 610 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 HOXB6P17509 224 aaKnown RBP10.35□□□□□ -0.75
CLIP1-201ENST00000302528 TCEA1P23193 301 aaKnown RBP10.35□□□□□ -0.75
CLIP1-201ENST00000302528 KDELR1P24390 212 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 PUS10Q3MIT2 529 aaKnown RBP10.35□□□□□ -0.75
CLIP1-201ENST00000302528 TBC1D3GQ6DHY5 549 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 TBC1D3CQ6IPX1 549 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 TBC1D3Q8IZP1 549 aaPredicted RBP10.35□□□□□ -0.75
CLIP1-201ENST00000302528 C11orf65Q8NCR3 313 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 OR52K2Q8NGK3 314 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 POF1BQ8WVV4 589 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 PMEPA1Q969W9 287 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 PGM2Q96G03 612 aa10.35□□□□□ -0.75
CLIP1-201ENST00000302528 RGS17Q9UGC6 210 aaPredicted RBP10.35□□□□□ -0.75
CLIP1-201ENST00000302528 ARHGEF28Q8N1W1 1705 aaKnown RBP10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms