RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 STYXQ8WUJ0 223 aa16.77■□□□□ 0.28
CPSF4-201ENST00000292476 TRIB3Q96RU7 358 aa16.77■□□□□ 0.28
CPSF4-201ENST00000292476 RTKNQ9BST9 563 aa16.77■□□□□ 0.28
CPSF4-201ENST00000292476 SLC8A2Q9UPR5 921 aa16.77■□□□□ 0.28
CPSF4-201ENST00000292476 RAI2Q9Y5P3 530 aa16.77■□□□□ 0.28
CPSF4-201ENST00000292476 ACTL7AQ9Y615 435 aa16.77■□□□□ 0.28
CPSF4-201ENST00000292476 WNT6Q9Y6F9 365 aa16.77■□□□□ 0.28
CPSF4-201ENST00000292476 NUP210Q8TEM1 1887 aaPredicted RBP16.77■□□□□ 0.27
CPSF4-201ENST00000292476 TTC24A2A3L6 582 aaPredicted RBP16.76■□□□□ 0.27
CPSF4-201ENST00000292476 MROH6A6NGR9 719 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 MATN2O00339 956 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 HOXC11O43248 304 aaPredicted RBP16.76■□□□□ 0.27
CPSF4-201ENST00000292476 SOCS5O75159 536 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 CRABP2P29373 138 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 SERPINB5P36952 375 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 RGRP47804 291 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 IRF9Q00978 393 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 RAD51Q06609 339 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 PRKAA1Q13131 559 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 MSLNQ13421 630 aaPredicted RBP16.76■□□□□ 0.27
CPSF4-201ENST00000292476 PDGFRLQ15198 375 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 DHCR24Q15392 516 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 FAM78AQ5JUQ0 283 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 KIAA0408Q6ZU52 694 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 KIAA0907Q7Z7F0 614 aaPredicted RBP16.76■□□□□ 0.27
CPSF4-201ENST00000292476 ZNF781Q8N8C0 355 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 PDCD6IPQ8WUM4 868 aaKnown RBP16.76■□□□□ 0.27
CPSF4-201ENST00000292476 EXOC2Q96KP1 924 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 CCDC28BQ9BUN5 200 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 GATA5Q9BWX5 397 aaPredicted RBP16.76■□□□□ 0.27
CPSF4-201ENST00000292476 VCXQ9H320 206 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 VCX3BQ9H321 246 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 POMKQ9H5K3 350 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 CD320Q9NPF0 282 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 MRGBPQ9NV56 204 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.76■□□□□ 0.27
CPSF4-201ENST00000292476 CDH7Q9ULB5 785 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 SLC39A10Q9ULF5 831 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 CLEC4EQ9ULY5 219 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 FCF1Q9Y324 198 aaKnown RBP16.76■□□□□ 0.27
CPSF4-201ENST00000292476 TTC28Q96AY4 2481 aa16.76■□□□□ 0.27
CPSF4-201ENST00000292476 A0A1W2PQ67 120 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 C2orf81A6NN90 581 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 HDAC3O15379 428 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 SLC7A4O43246 635 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 VAPBO95292 243 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 ADH5P11766 374 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 COX4I1P13073 169 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 POLR2EP19388 210 aaKnown RBP16.75■□□□□ 0.27
CPSF4-201ENST00000292476 VASPP50552 380 aaPredicted RBP16.75■□□□□ 0.27
CPSF4-201ENST00000292476 XIAPP98170 497 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 ECT2LQ008S8 904 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 ZP2Q05996 745 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 KLF10Q13118 480 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 USP10Q14694 798 aaKnown RBP16.75■□□□□ 0.27
CPSF4-201ENST00000292476 CNGA3Q16281 694 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 ESRP1Q6NXG1 681 aaKnown RBP16.75■□□□□ 0.27
CPSF4-201ENST00000292476 NAPRTQ6XQN6 538 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 GET4Q7L5D6 327 aaPredicted RBP16.75■□□□□ 0.27
CPSF4-201ENST00000292476 PLPP6Q8IY26 295 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 PCDH20Q8N6Y1 951 aaKnown RBP16.75■□□□□ 0.27
CPSF4-201ENST00000292476 OR2AP1Q8NGE2 309 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 DTX3LQ8TDB6 740 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 ATXN7L3BQ96GX2 97 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 RIPOR3Q96MK2 946 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 NR1H4Q96RI1 486 aaPredicted RBP16.75■□□□□ 0.27
CPSF4-201ENST00000292476 TUBGCP5Q96RT8 1024 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 ATP13A3Q9H7F0 1226 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 CAB39LQ9H9S4 337 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 ZFP14Q9HCL3 533 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 TCF7L2Q9NQB0 619 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 FBXO10Q9UK96 956 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 INTS6Q9UL03 887 aaKnown RBP16.75■□□□□ 0.27
CPSF4-201ENST00000292476 MUC3AQ02505 3323 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 A0A087X1B8 175 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.75■□□□□ 0.27
CPSF4-201ENST00000292476 ANKRD66B4E2M5 251 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 TARM1B6A8C7 271 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 ASLP04424 464 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 SLC35E2BP0CK96 405 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 GRIA4P48058 902 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 ARCN1P48444 511 aaKnown RBP16.75■□□□□ 0.27
CPSF4-201ENST00000292476 RPL14P50914 215 aaKnown RBP16.75■□□□□ 0.27
CPSF4-201ENST00000292476 EPHB1P54762 984 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 PRAMEP78395 509 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 BCL2L1Q07817 233 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 IHHQ14623 411 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 HERC3Q15034 1050 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 TAF1AQ15573 450 aaPredicted RBP16.75■□□□□ 0.27
CPSF4-201ENST00000292476 EML3Q32P44 896 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 FUT11Q495W5 492 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 ARMC12Q5T9G4 340 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 RAPH1Q70E73 1250 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 ADHFE1Q8IWW8 467 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 PLCD3Q8N3E9 789 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 TMEM151AQ8N4L1 468 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 CPSF7Q8N684 471 aaKnown RBP16.75■□□□□ 0.27
CPSF4-201ENST00000292476 BLOC1S5Q8TDH9 187 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 CLPTM1LQ96KA5 538 aa16.75■□□□□ 0.27
CPSF4-201ENST00000292476 S100A14Q9HCY8 104 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms