RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 BPGMP07738 259 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 FDXRP22570 491 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 XPAP23025 273 aaPredicted RBP14.04□□□□□ -0.16
SS18-201ENST00000269137 PPARGP37231 505 aaPredicted RBP14.04□□□□□ -0.16
SS18-201ENST00000269137 SLC26A3P40879 764 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 PTGER3P43115 390 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 SPINT3P49223 89 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 CDKN2DP55273 166 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 IRF9Q00978 393 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 NFATC2Q13469 925 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 ARHGEF7Q14155 803 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 LYPLAL1Q5VWZ2 237 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 C16orf46Q6P387 395 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 FAM151BQ6UXP7 276 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 DPPA4Q7L190 304 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 PARS2Q7L3T8 475 aaKnown RBP14.04□□□□□ -0.16
SS18-201ENST00000269137 TRIM42Q8IWZ5 723 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 CENPLQ8N0S6 344 aaPredicted RBP14.04□□□□□ -0.16
SS18-201ENST00000269137 PIP4K2CQ8TBX8 421 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 DTX3LQ8TDB6 740 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 TSNARE1Q96NA8 513 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 ACOX2Q99424 681 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 FAM96AQ9H5X1 160 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 PRSS16Q9NQE7 514 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 SIRPGQ9P1W8 387 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 COMMD10Q9Y6G5 202 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 RGSL1A5PLK6 1076 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 SPECC1L-ADORA2AF8WAN1 911 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 K7EQS6 105 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 KLF11O14901 512 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 KLHL2O95198 593 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 APOA4P06727 396 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 C1SP09871 688 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 CD9P21926 228 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 CTHP32929 405 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 GMPRP36959 345 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 MMP12P39900 470 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 TIAL1Q01085 375 aaKnown RBP eCLIP14.04□□□□□ -0.16
SS18-201ENST00000269137 SEMG2Q02383 582 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 TSNAXIP1Q2TAA8 658 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 ERAP2Q6P179 960 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 TAS2R42Q7RTR8 314 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 CPLX4Q7Z7G2 160 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 RALGPS2Q86X27 583 aaPredicted RBP14.04□□□□□ -0.16
SS18-201ENST00000269137 RAVER1Q8IY67 606 aaKnown RBP14.04□□□□□ -0.16
SS18-201ENST00000269137 SLC44A3Q8N4M1 653 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 GPR26Q8NDV2 337 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 ZNF398Q8TD17 642 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 DNASE1L2Q92874 299 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 PPP1R16AQ96I34 528 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 UBXN10Q96LJ8 280 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 BIRC8Q96P09 236 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 GPR78Q96P69 363 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 TTC1Q99614 292 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 PHF7Q9BWX1 381 aaPredicted RBP14.04□□□□□ -0.16
SS18-201ENST00000269137 RABEP2Q9H5N1 569 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 ASB8Q9H765 288 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 C8orf33Q9H7E9 229 aaPredicted RBP14.04□□□□□ -0.16
SS18-201ENST00000269137 MANSC1Q9H8J5 431 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 KCNK12Q9HB15 430 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 NMRAL1Q9HBL8 299 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 RAD18Q9NS91 495 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 ZNF358Q9NW07 568 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 CACNA2D2Q9NY47 1150 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 PKD2L2Q9NZM6 624 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 NFKBIL1Q9UBC1 381 aaPredicted RBP14.04□□□□□ -0.16
SS18-201ENST00000269137 FNDC3AQ9Y2H6 1198 aaKnown RBP14.04□□□□□ -0.16
SS18-201ENST00000269137 STON1Q9Y6Q2 735 aa14.04□□□□□ -0.16
SS18-201ENST00000269137 UNC80Q8N2C7 3258 aa14.03□□□□□ -0.16
SS18-201ENST00000269137 UBA6A0AVT1 1052 aaPredicted RBP14.03□□□□□ -0.16
SS18-201ENST00000269137 WDR91A4D1P6 747 aa14.03□□□□□ -0.16
SS18-201ENST00000269137 ESR1P03372 595 aa14.03□□□□□ -0.16
SS18-201ENST00000269137 EPHX1P07099 455 aa14.03□□□□□ -0.16
SS18-201ENST00000269137 KIR2DL1P43626 348 aaPredicted RBP14.03□□□□□ -0.16
SS18-201ENST00000269137 DCDC1P59894 354 aa14.03□□□□□ -0.16
SS18-201ENST00000269137 RALGDSQ12967 914 aa14.03□□□□□ -0.16
SS18-201ENST00000269137 ZNF460Q14592 562 aa14.03□□□□□ -0.16
SS18-201ENST00000269137 CHRNA6Q15825 494 aa14.03□□□□□ -0.16
SS18-201ENST00000269137 LRRC73Q5JTD7 316 aa14.03□□□□□ -0.16
SS18-201ENST00000269137 TBC1D1Q86TI0 1168 aaPredicted RBP14.03□□□□□ -0.16
SS18-201ENST00000269137 SERPINA9Q86WD7 417 aa14.03□□□□□ -0.16
SS18-201ENST00000269137 NUDCD3Q8IVD9 361 aa14.03□□□□□ -0.16
SS18-201ENST00000269137 RAB3IL1Q8TBN0 382 aa14.03□□□□□ -0.16
SS18-201ENST00000269137 KCNV2Q8TDN2 545 aa14.03□□□□□ -0.16
SS18-201ENST00000269137 ZNF473Q8WTR7 871 aaKnown RBP14.03□□□□□ -0.16
SS18-201ENST00000269137 EZH1Q92800 747 aaPredicted RBP14.03□□□□□ -0.16
SS18-201ENST00000269137 ARRDC3Q96B67 414 aa14.03□□□□□ -0.16
SS18-201ENST00000269137 NSRP1Q9H0G5 558 aaKnown RBP14.03□□□□□ -0.16
SS18-201ENST00000269137 CDH19Q9H159 772 aa14.03□□□□□ -0.16
SS18-201ENST00000269137 CCDC68Q9H2F9 335 aa14.03□□□□□ -0.16
SS18-201ENST00000269137 GPAMQ9HCL2 828 aa14.03□□□□□ -0.16
SS18-201ENST00000269137 LIMD1Q9UGP4 676 aa14.03□□□□□ -0.16
SS18-201ENST00000269137 CKAP5Q14008 2032 aa14.03□□□□□ -0.16
SS18-201ENST00000269137 MYO10Q9HD67 2058 aa14.02□□□□□ -0.16
SS18-201ENST00000269137 ANTXRLA6NF34 631 aa14.02□□□□□ -0.16
SS18-201ENST00000269137 C1QTNF3-AMACRE9PGA6 284 aa14.02□□□□□ -0.16
SS18-201ENST00000269137 H0Y858 1186 aa14.02□□□□□ -0.16
SS18-201ENST00000269137 PSMD11O00231 422 aa14.02□□□□□ -0.16
SS18-201ENST00000269137 PKMP14618 531 aaKnown RBP14.02□□□□□ -0.16
SS18-201ENST00000269137 FMO4P31512 558 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms