RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 MAGEE1Q9HCI5 957 aa12.89□□□□□ -0.35
SPTLC1-201ENST00000262554 CFAP97Q9P2B7 532 aa12.89□□□□□ -0.35
SPTLC1-201ENST00000262554 DNMT3BQ9UBC3 853 aaKnown RBP12.89□□□□□ -0.35
SPTLC1-201ENST00000262554 LRRC42Q9Y546 428 aa12.89□□□□□ -0.35
SPTLC1-201ENST00000262554 COPG1Q9Y678 874 aaKnown RBP12.89□□□□□ -0.35
SPTLC1-201ENST00000262554 H3BMM5 538 aa12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 UBXN8O00124 270 aa12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 FZD6O60353 706 aa12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 KERAO60938 352 aa12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 FKBP6O75344 327 aa12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 MT-CO1P00395 513 aa12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 GFAPP14136 432 aa12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 PKMP14618 531 aaKnown RBP12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 NUDT2P50583 147 aa12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 INHBCP55103 352 aa12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 PIANPQ8IYJ0 282 aa12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 APCDD1Q8J025 514 aa12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 FBXW8Q8N3Y1 598 aa12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 ACDQ96AP0 544 aa12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 PAWRQ96IZ0 340 aaKnown RBP12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 MARK4Q96L34 752 aa12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 ATOH8Q96SQ7 321 aa12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 GPR21Q99679 349 aa12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 NDE1Q9NXR1 346 aa12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 RNF112Q9ULX5 631 aa12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 PRPF19Q9UMS4 504 aaKnown RBP12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 FNDC3AQ9Y2H6 1198 aaKnown RBP12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 ZNF711Q9Y462 761 aa12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 COMMD10Q9Y6G5 202 aa12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 OAS3Q9Y6K5 1087 aaKnown RBP12.88□□□□□ -0.35
SPTLC1-201ENST00000262554 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 SYCE1LA8MT33 242 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 SUPT3HB4E1H0 165 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 UBFD1O14562 309 aaKnown RBP12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 KIAA0355O15063 1070 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 SUPT3HO75486 399 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 PDE5AO76074 875 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 PGLSO95336 258 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 CXCL14O95715 111 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 ADH1AP07327 375 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 CD9P21926 228 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 MAPK8P45983 427 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 CLCN4P51793 760 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 C1QTNF8P60827 252 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 RPL26P61254 145 aaKnown RBP12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 PFKFB4Q16877 469 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 MUM1Q2TAK8 710 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 PPM1LQ5SGD2 360 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 AAGABQ6PD74 315 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 LRRC74BQ6ZQY2 392 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 TAS2R42Q7RTR8 314 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 OTOP2Q7RTS6 562 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 METTL3Q86U44 580 aaKnown RBP12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 TMC8Q8IU68 726 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 BBS7Q8IWZ6 715 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 PELI3Q8N2H9 469 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 STK40Q8N2I9 435 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 FIBCD1Q8N539 461 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 JADE3Q92613 823 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.87□□□□□ -0.352e-6■■■■■ 47.9
SPTLC1-201ENST00000262554 ZNF570Q96NI8 536 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 BIRC8Q96P09 236 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 SERPINI1Q99574 410 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 LBHD1Q9BQE6 289 aaPredicted RBP12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 LRRC3Q9BY71 257 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 TM6SF2Q9BZW4 377 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 TNFRSF12AQ9NP84 129 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 KIAA1522Q9P206 1035 aaPredicted RBP12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 TRMT6Q9UJA5 497 aaKnown RBP12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 MED16Q9Y2X0 877 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 SLC30A1Q9Y6M5 507 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 HELZP42694 1942 aaKnown RBP12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 K7ERQ8 282 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 UBDO15205 165 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 NVLO15381 856 aaKnown RBP12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 GPC4O75487 556 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 C8AP07357 584 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 MTHFD2P13995 350 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 CTPS1P17812 591 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 HMGCLP35914 325 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 PTGER3P43115 390 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 GJA8P48165 433 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 CSNK1DP48730 415 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 CACNG1Q06432 222 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 BCL2L1Q07817 233 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 SETMARQ53H47 684 aaPredicted RBP12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 TPGS1Q6ZTW0 290 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 CHSY3Q70JA7 882 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 CLYBLQ8N0X4 340 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 PAF1Q8N7H5 531 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 PPFIBP2Q8ND30 876 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 PIH1D2Q8WWB5 315 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 EFCAB1Q9HAE3 211 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 IL17CQ9P0M4 197 aa12.87□□□□□ -0.35
SPTLC1-201ENST00000262554 A0A1W2PRU2 124 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 CCDC189A1A4V9 331 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 ZBBXA8MT70 800 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 E5RI56 91 aa12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 SMAD6O43541 496 aaKnown RBP12.86□□□□□ -0.35
SPTLC1-201ENST00000262554 OR1I1O60431 355 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms