RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 UBE2R2Q712K3 238 aaPredicted RBP13.61□□□□□ -0.23
LDLR-201ENST00000252444 MAGEE1Q9HCI5 957 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 MIOSQ9NXC5 875 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 MARCOQ9UEW3 520 aaPredicted RBP13.61□□□□□ -0.23
LDLR-201ENST00000252444 MRPL42Q9Y6G3 142 aaKnown RBP13.61□□□□□ -0.23
LDLR-201ENST00000252444 KAT6AQ92794 2004 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 RNASEH2AO75792 299 aaKnown RBP13.61□□□□□ -0.23
LDLR-201ENST00000252444 FLOT2Q14254 428 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 RAB41Q5JT25 222 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 HLA-DQA1Q5Y7H0 255 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 DOK6Q6PKX4 331 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 STX19Q8N4C7 294 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 TTC29Q8NA56 475 aaPredicted RBP13.61□□□□□ -0.23
LDLR-201ENST00000252444 RP9Q8TA86 221 aaKnown RBP13.61□□□□□ -0.23
LDLR-201ENST00000252444 AGR3Q8TD06 166 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 ARMC5Q96C12 935 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 FAM120BQ96EK7 910 aaKnown RBP13.61□□□□□ -0.23
LDLR-201ENST00000252444 ALG9Q9H6U8 611 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 PCDHGB3Q9Y5G1 929 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 NCF1BA6NI72 391 aaPredicted RBP13.61□□□□□ -0.23
LDLR-201ENST00000252444 NCF1CA8MVU1 366 aaPredicted RBP13.61□□□□□ -0.23
LDLR-201ENST00000252444 USP12O75317 370 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 NCF1P14598 390 aaPredicted RBP13.61□□□□□ -0.23
LDLR-201ENST00000252444 NUDT2P50583 147 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 SMIM11AP58511 58 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 FASTKQ14296 549 aaKnown RBP13.61□□□□□ -0.23
LDLR-201ENST00000252444 RHBDF2Q6PJF5 856 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 TIFABQ6ZNK6 161 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 SLC30A8Q8IWU4 369 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 TRPV1Q8NER1 839 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 ISG20Q96AZ6 181 aaKnown RBP13.61□□□□□ -0.23
LDLR-201ENST00000252444 KATNBL1Q9H079 304 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 C3orf14Q9HBI5 128 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 CYP4F12Q9HCS2 524 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 ADPRHL2Q9NX46 363 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 TMCC3Q9ULS5 477 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 PLLPQ9Y342 182 aa13.61□□□□□ -0.23
LDLR-201ENST00000252444 CXorf51AA0A1B0GTR3 108 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 AIM2O14862 343 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 LIN7AO14910 233 aaPredicted RBP13.6□□□□□ -0.23
LDLR-201ENST00000252444 AZIN1O14977 448 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 SEC22BO75396 215 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 DGKIO75912 1065 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 BPGMP07738 259 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 FAM151BQ6UXP7 276 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 FNDC5Q8NAU1 212 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 HCAR2Q8TDS4 363 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 SELENOMQ8WWX9 145 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 NELL1Q92832 810 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 RTP4Q96DX8 246 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 SUSD2Q9UGT4 822 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 COCHO43405 550 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 SKAP2O75563 359 aaPredicted RBP13.6□□□□□ -0.23
LDLR-201ENST00000252444 KCNH1O95259 989 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 ITGAXP20702 1163 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 MAXP61244 160 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 CSTF3Q12996 717 aaKnown RBP13.6□□□□□ -0.23
LDLR-201ENST00000252444 SPIDRQ14159 915 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 KRT73Q86Y46 540 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 SYT12Q8IV01 421 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 IQCKQ8N0W5 287 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 FERD3LQ96RJ6 166 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 GPR62Q9BZJ7 368 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 RPS6KB2Q9UBS0 482 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 DNAJB4Q9UDY4 337 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 PIGNO95427 931 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 GALNTL6Q49A17 601 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 VITQ6UXI7 678 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 LRRC70Q7Z2Q7 622 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 UNC5BQ8IZJ1 945 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 RAD51AP1Q96B01 352 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 KIFC1Q9BW19 673 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 PSMD11O00231 422 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 TMEM40Q8WWA1 233 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 MIPEPQ99797 713 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 FER1L6Q2WGJ9 1857 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 DPYSQ14117 519 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 SCUBE1Q8IWY4 988 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 OR10T2Q8NGX3 314 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 FIBINQ8TAL6 211 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 RNF217Q8TC41 542 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 KLHL32Q96NJ5 620 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 BBS4Q96RK4 519 aa13.6□□□□□ -0.23
LDLR-201ENST00000252444 TEX28O15482 410 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 PI15O43692 258 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 CTPS1P17812 591 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 PSMA3P25788 255 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 KIAA1161Q6NSJ0 714 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 THOC1Q96FV9 657 aaKnown RBP13.59□□□□□ -0.23
LDLR-201ENST00000252444 PSKH2Q96QS6 385 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 THUMPD3Q9BV44 507 aaKnown RBP13.59□□□□□ -0.23
LDLR-201ENST00000252444 NLE1Q9NVX2 485 aaPredicted RBP13.59□□□□□ -0.23
LDLR-201ENST00000252444 CD207Q9UJ71 328 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 HS6ST1O60243 411 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 EPN2O95208 641 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 SERPINA6P08185 405 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 TYRP14679 529 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 HSPA14Q0VDF9 509 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 SLC1A5Q15758 541 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 TMEM63BQ5T3F8 832 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms