RNA–Protein interactions for RNA: ENST00000046640.7

CTNS-201, Transcript of cystinosin, lysosomal cystine transporter, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTNS, Length 2,866 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNS-201ENST00000046640 PIM1P11309 404 aaPredicted RBP13.1□□□□□ -0.31
CTNS-201ENST00000046640 HOXD9P28356 352 aaPredicted RBP13.1□□□□□ -0.31
CTNS-201ENST00000046640 ECT2LQ008S8 904 aa13.1□□□□□ -0.31
CTNS-201ENST00000046640 TIAL1Q01085 375 aaKnown RBP eCLIP13.1□□□□□ -0.31
CTNS-201ENST00000046640 FASTKQ14296 549 aaKnown RBP13.1□□□□□ -0.31
CTNS-201ENST00000046640 HERC6Q8IVU3 1022 aa13.1□□□□□ -0.31
CTNS-201ENST00000046640 TSPAN14Q8NG11 270 aa13.1□□□□□ -0.31
CTNS-201ENST00000046640 CINPQ9BW66 212 aaPredicted RBP13.1□□□□□ -0.31
CTNS-201ENST00000046640 GSTO2Q9H4Y5 243 aa13.1□□□□□ -0.31
CTNS-201ENST00000046640 ZNF385DQ9H6B1 395 aa13.1□□□□□ -0.31
CTNS-201ENST00000046640 CHCHD3Q9NX63 227 aaKnown RBP13.1□□□□□ -0.31
CTNS-201ENST00000046640 PHF24Q9UPV7 400 aa13.1□□□□□ -0.31
CTNS-201ENST00000046640 PCDHGA7Q9Y5G6 932 aa13.1□□□□□ -0.31
CTNS-201ENST00000046640 FAM92AA1XBS5 289 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 PRORSD1PA6NEY8 169 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 ARVCFO00192 962 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 TRIM38O00635 465 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 ACSL4O60488 711 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 IGLV3-27P01718 113 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 GFAPP14136 432 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 POLD2P49005 469 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 SH3BP2P78314 561 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 ZBTB46Q86UZ6 589 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 LCA5Q86VQ0 697 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 TRPC4APQ8TEL6 797 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 CDKN2AIPNLQ96HQ2 116 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 LRCH3Q96II8 777 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 RPL10LQ96L21 214 aaKnown RBP13.09□□□□□ -0.31
CTNS-201ENST00000046640 RNF38Q9H0F5 515 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 SARS2Q9NP81 518 aaKnown RBP13.09□□□□□ -0.31
CTNS-201ENST00000046640 CATSPERZQ9NTU4 200 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 NDUFA13Q9P0J0 144 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 BCAP29Q9UHQ4 241 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 IKZF3Q9UKT9 509 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 BTRCQ9Y297 605 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 COL4A4P53420 1690 aaPredicted RBP13.09□□□□□ -0.31
CTNS-201ENST00000046640 GREB1Q4ZG55 1949 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 C2orf78A6NCI8 922 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 MOXD2PA6NHM9 499 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 COCHO43405 550 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 AKAP10O43572 662 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 AP1G1O43747 822 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 OR1I1O60431 355 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 SNAP91O60641 907 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 RHOBTB1O94844 696 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 UNC50Q53HI1 259 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 KIAA1841Q6NSI8 718 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 MRNIPQ6NTE8 343 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 PAQR3Q6TCH7 311 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 SCIMPQ6UWF3 145 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 GLT6D1Q7Z4J2 308 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 AHI1Q8N157 1196 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 CPSF7Q8N684 471 aaKnown RBP13.09□□□□□ -0.31
CTNS-201ENST00000046640 KLHL23Q8NBE8 558 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 MDGA1Q8NFP4 955 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 OR6K2Q8NGY2 324 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 GABPB2Q8TAK5 448 aaPredicted RBP13.09□□□□□ -0.31
CTNS-201ENST00000046640 RANBP9Q96S59 729 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.09□□□□□ -0.312e-6■■□□□ 11.7
CTNS-201ENST00000046640 MUC3BQ9H195 1237 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 EML4Q9HC35 981 aaKnown RBP13.09□□□□□ -0.31
CTNS-201ENST00000046640 MID1IP1Q9NPA3 183 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 EGFL7Q9UHF1 273 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 DNMT3LQ9UJW3 386 aa13.09□□□□□ -0.31
CTNS-201ENST00000046640 PATJQ8NI35 1801 aa13.08□□□□□ -0.31
CTNS-201ENST00000046640 PDLIM1O00151 329 aa13.08□□□□□ -0.32
CTNS-201ENST00000046640 PSMD12O00232 456 aaPredicted RBP13.08□□□□□ -0.32
CTNS-201ENST00000046640 RPP40O75818 363 aaKnown RBP13.08□□□□□ -0.32
CTNS-201ENST00000046640 TMCC1O94876 653 aa13.08□□□□□ -0.32
CTNS-201ENST00000046640 PAPSS2O95340 614 aaPredicted RBP13.08□□□□□ -0.32
CTNS-201ENST00000046640 CD1DP15813 335 aa13.08□□□□□ -0.32
CTNS-201ENST00000046640 ZNF26P17031 533 aaPredicted RBP13.08□□□□□ -0.32
CTNS-201ENST00000046640 CORO1AP31146 461 aaKnown RBP13.08□□□□□ -0.32
CTNS-201ENST00000046640 OXCT1P55809 520 aa13.08□□□□□ -0.32
CTNS-201ENST00000046640 DNAJB13P59910 316 aa13.08□□□□□ -0.32
CTNS-201ENST00000046640 PLOD1Q02809 727 aaPredicted RBP13.08□□□□□ -0.32
CTNS-201ENST00000046640 TAF12Q16514 161 aa13.08□□□□□ -0.32
CTNS-201ENST00000046640 ZNF678Q5SXM1 525 aa13.08□□□□□ -0.32
CTNS-201ENST00000046640 REP15Q6BDI9 236 aa13.08□□□□□ -0.32
CTNS-201ENST00000046640 SETD3Q86TU7 594 aaPredicted RBP13.08□□□□□ -0.32
CTNS-201ENST00000046640 TICAM1Q8IUC6 712 aa13.08□□□□□ -0.32
CTNS-201ENST00000046640 DDIASQ8IXT1 998 aa13.08□□□□□ -0.32
CTNS-201ENST00000046640 CATSPER1Q8NEC5 780 aa13.08□□□□□ -0.32
CTNS-201ENST00000046640 BRSK1Q8TDC3 778 aa13.08□□□□□ -0.32
CTNS-201ENST00000046640 ZFRQ96KR1 1074 aaKnown RBP13.08□□□□□ -0.32
CTNS-201ENST00000046640 PDFQ9HBH1 243 aa13.08□□□□□ -0.32
CTNS-201ENST00000046640 SEMA4BQ9NPR2 832 aaPredicted RBP13.08□□□□□ -0.32
CTNS-201ENST00000046640 POLR3BQ9NW08 1133 aaPredicted RBP13.08□□□□□ -0.32
CTNS-201ENST00000046640 UTP6Q9NYH9 597 aaKnown RBP13.08□□□□□ -0.32
CTNS-201ENST00000046640 UBA2Q9UBT2 640 aaPredicted RBP13.08□□□□□ -0.32
CTNS-201ENST00000046640 DMTF1Q9Y222 760 aa13.08□□□□□ -0.32
CTNS-201ENST00000046640 FBP2O00757 339 aa13.08□□□□□ -0.32
CTNS-201ENST00000046640 SEC24AO95486 1093 aa13.08□□□□□ -0.32
CTNS-201ENST00000046640 CLIC3O95833 236 aa13.08□□□□□ -0.32
CTNS-201ENST00000046640 ALDH1A1P00352 501 aa13.08□□□□□ -0.32
CTNS-201ENST00000046640 CDK4P11802 303 aa13.08□□□□□ -0.32
CTNS-201ENST00000046640 IMPDH1P20839 514 aa13.08□□□□□ -0.32
CTNS-201ENST00000046640 GRIA3P42263 894 aa13.08□□□□□ -0.32
CTNS-201ENST00000046640 YBEYP58557 167 aaPredicted RBP13.08□□□□□ -0.32
CTNS-201ENST00000046640 TRIM25Q14258 630 aaKnown RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms