RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 CHI3L1P36222 383 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF143P52747 638 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 NAGLUP54802 743 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 VPS35Q96QK1 796 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF358Q9NW07 568 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 B3GNT2Q9NY97 397 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 TRPS1Q9UHF7 1281 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 SYNJ2BP-COX16A0A087WUM0 186 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 CASKO14936 926 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 PSKH1P11801 424 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 ITGALP20701 1170 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 IDH2P48735 452 aaKnown RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 PRMT2P55345 433 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 MAZP56270 477 aaKnown RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 ADAM15Q13444 863 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 DHRS4L2Q6PKH6 230 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 SIPA1Q96FS4 1042 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 DHRS9Q9BPW9 319 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 MAPKAP1Q9BPZ7 522 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 SPATA9Q9BWV2 254 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 IL25Q9H293 177 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 TPK1Q9H3S4 243 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 BLOC1S4Q9NUP1 217 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 CUEDC1Q9NWM3 386 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 COX16Q9P0S2 106 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 SIRPGQ9P1W8 387 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 FAM205CA6NFA0 338 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 KRT33AO76009 404 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 HUNKP57058 714 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 GAD2Q05329 585 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 TGM3Q08188 693 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 COLEC12Q5KU26 742 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 TRAPPC3LQ5T215 181 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 ADAM32Q8TC27 787 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 SERPINB11Q96P15 392 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF334Q9HCZ1 680 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 TMEM138Q9NPI0 162 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 SNX4O95219 450 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 PTBP1P26599 531 aaKnown RBP eCLIP4.66□□□□□ -1.663e-7■■■■□ 20.5
SCN1A-220ENST00000641603 ABL2P42684 1182 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 MAPK8P45983 427 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 GDI2P50395 445 aaKnown RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 ARHGDIBP52566 201 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 MAMLD1Q13495 774 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 PCBP1Q15365 356 aaKnown RBP eCLIP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 CHST15Q7LFX5 561 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 NATD1Q8N6N6 113 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF607Q96SK3 696 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 ADGRE3Q9BY15 652 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 HSD3B7Q9H2F3 369 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 PPM1HQ9ULR3 514 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 EDARQ9UNE0 448 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 CACNA1FO60840 1977 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 USP17L3A6NCW0 530 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 USP17L4A6NCW7 530 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 TIPRLO75663 272 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 UPK1BO75841 260 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 PRPS2P11908 318 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 IL4RP24394 825 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 CXCR4P61073 352 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 GSTM4Q03013 218 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 IL18Q14116 193 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 EPHA10Q5JZY3 1008 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 USP17L1Q7RTZ2 530 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 MAP4K3Q8IVH8 894 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 CPNE9Q8IYJ1 553 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 SPPL2AQ8TCT8 520 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 VMP1Q96GC9 406 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 EXOC2Q96KP1 924 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 PANX3Q96QZ0 392 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 GAREM1Q9H706 876 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 KLHL21Q9UJP4 597 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 PCDHGB5Q9Y5G0 923 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 ABCC6O95255 1503 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 A0A1W2PPW3 197 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 C1orf196B1AJZ1 125 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 PCDHGA12O60330 932 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 CPNE3O75131 537 aaKnown RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 MATKP42679 507 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 ASMTP46597 345 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 DSTNP60981 165 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 BIKQ13323 160 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 IKBKEQ14164 716 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 KCTD1Q719H9 257 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 CCDC71Q8IV32 467 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 C7orf31Q8N865 590 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 CSGALNACT1Q8TDX6 532 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 HDAC10Q969S8 669 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 GAL3ST1Q99999 423 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 MROQ9BYG7 248 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 LHX5Q9H2C1 402 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 C12orf10Q9HB07 376 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 TMEM39AQ9NV64 488 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 KCNN3Q9UGI6 736 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 POFUT2Q9Y2G5 429 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 A0A1B0GVM2 712 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 USP17L15C9J2P7 530 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 USP17L13C9JLJ4 530 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 USP17L11C9JVI0 530 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 USP17L18D6R9N7 530 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms