RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ZNF766Q5HY98 468 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 ZNF569Q5MCW4 686 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 FBXO47Q5MNV8 452 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 PDSS1Q5T2R2 415 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 C10orf62Q5T681 223 aaPredicted RBP0.46□□□□□ -2.34
VPS35-212ENST00000640313 TMEM268Q5VZI3 342 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 ANO1Q5XXA6 986 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 TXNDC8Q6A555 127 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 ZNF280DQ6N043 979 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 LRRC8EQ6NSJ5 796 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 C1orf228Q6PIY5 440 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 GFRALQ6UXV0 394 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 LDHAL6AQ6ZMR3 332 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 QSOX2Q6ZRP7 698 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 MOB3CQ70IA8 216 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 NOXA1Q86UR1 476 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 LRRTM4Q86VH4 590 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 NRROSQ86YC3 692 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 DENND6AQ8IWF6 608 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 DHX40Q8IX18 779 aaKnown RBP0.46□□□□□ -2.34
VPS35-212ENST00000640313 CTAGE4Q8IX94 777 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 SLC35F3Q8IY50 421 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 FTSJ3Q8IY81 847 aaKnown RBP0.46□□□□□ -2.34
VPS35-212ENST00000640313 MB21D2Q8IYB1 491 aaPredicted RBP0.46□□□□□ -2.34
VPS35-212ENST00000640313 DSELQ8IZU8 1212 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 C1orf87Q8N0U7 546 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 SLC39A11Q8N1S5 342 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 GALNT15Q8N3T1 639 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 PLD5Q8N7P1 536 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 FSIP1Q8NA03 581 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 DDHD1Q8NEL9 900 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 ZMIZ2Q8NF64 920 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 OR2AK2Q8NG84 335 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 CEP70Q8NHQ1 597 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 CREB3L4Q8TEY5 395 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 GDPD5Q8WTR4 605 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 NCSTNQ92542 709 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 TM9SF4Q92544 642 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 ERGIC1Q969X5 290 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 RFT1Q96AA3 541 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 RHBDF1Q96CC6 855 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 RNF183Q96D59 192 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 CDCA5Q96FF9 252 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 SCRN2Q96FV2 425 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 RBM17Q96I25 401 aaKnown RBP0.46□□□□□ -2.34
VPS35-212ENST00000640313 ST6GAL2Q96JF0 529 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 C18orf12Q96KH6 178 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 ZNF583Q96ND8 569 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 YME1L1Q96TA2 773 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 PCYT2Q99447 389 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 MPHOSPH6Q99547 160 aaKnown RBP0.46□□□□□ -2.34
VPS35-212ENST00000640313 PKP2Q99959 881 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 REEP2Q9BRK0 252 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 HAUS8Q9BT25 410 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 TUBB2BQ9BVA1 445 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 IFT27Q9BW83 186 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 NPLQ9BXD5 320 aaPredicted RBP0.46□□□□□ -2.34
VPS35-212ENST00000640313 PCGF6Q9BYE7 350 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 TRIM31Q9BZY9 425 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 TKTL2Q9H0I9 626 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 CSTL1Q9H114 145 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 TTYH1Q9H313 450 aaPredicted RBP0.46□□□□□ -2.34
VPS35-212ENST00000640313 PLEKHA4Q9H4M7 779 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 TAF1DQ9H5J8 278 aaPredicted RBP0.46□□□□□ -2.34
VPS35-212ENST00000640313 STN1Q9H668 368 aaKnown RBP0.46□□□□□ -2.34
VPS35-212ENST00000640313 EPHX3Q9H6B9 360 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 TTC12Q9H892 705 aaPredicted RBP0.46□□□□□ -2.34
VPS35-212ENST00000640313 CHODLQ9H9P2 273 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 BRF2Q9HAW0 419 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 MMP25Q9NPA2 562 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 MKKSQ9NPJ1 570 aaPredicted RBP0.46□□□□□ -2.34
VPS35-212ENST00000640313 SLC52A3Q9NQ40 469 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 ITM2CQ9NQX7 267 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 SPATS2LQ9NUQ6 558 aaKnown RBP0.46□□□□□ -2.34
VPS35-212ENST00000640313 TMEM30AQ9NV96 361 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 OR6C3Q9NZP0 311 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 SLC25A10Q9UBX3 287 aaPredicted RBP0.46□□□□□ -2.34
VPS35-212ENST00000640313 SLC9A2Q9UBY0 812 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 CACNG5Q9UF02 275 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 NDRG3Q9UGV2 375 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 GJD2Q9UKL4 321 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 MAN1B1Q9UKM7 699 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 RALYQ9UKM9 306 aaKnown RBP0.46□□□□□ -2.34
VPS35-212ENST00000640313 KCNS2Q9ULS6 477 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 HSF4Q9ULV5 492 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 PADI3Q9ULW8 664 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 GDAQ9Y2T3 454 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 DERAQ9Y315 318 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 PSAT1Q9Y617 370 aa0.46□□□□□ -2.34
VPS35-212ENST00000640313 ASTN2O75129 1339 aaPredicted RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 FCGBPQ9Y6R7 5405 aaPredicted RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 A0A096LPK6 155 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 A0A1W2PP11 408 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 A0A1W2PPI3 338 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 A0A1W2PQF6 199 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 C5orf60A6NFR6 353 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 SH2D7A6NKC9 451 aaPredicted RBP0.45□□□□□ -2.34
VPS35-212ENST00000640313 PEX12O00623 359 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 SOCS6O14544 535 aa0.45□□□□□ -2.34
VPS35-212ENST00000640313 SEPT4O43236 478 aa0.45□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms