RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 LDLRAD4O15165 306 aa3.98□□□□□ -1.77
CD44-239ENST00000639002 GUCY1B2O75343 617 aa3.98□□□□□ -1.77
CD44-239ENST00000639002 RRM1P23921 792 aa3.98□□□□□ -1.77
CD44-239ENST00000639002 ERVK11-1P61568 191 aa3.98□□□□□ -1.77
CD44-239ENST00000639002 BIRC2Q13490 618 aa3.98□□□□□ -1.77
CD44-239ENST00000639002 NAE1Q13564 534 aa3.98□□□□□ -1.77
CD44-239ENST00000639002 CCDC96Q2M329 555 aa3.98□□□□□ -1.77
CD44-239ENST00000639002 GRAMD1BQ3KR37 738 aa3.98□□□□□ -1.77
CD44-239ENST00000639002 KRT71Q3SY84 523 aa3.98□□□□□ -1.77
CD44-239ENST00000639002 SLC9B1Q4ZJI4 515 aa3.98□□□□□ -1.77
CD44-239ENST00000639002 DUS1LQ6P1R4 473 aaKnown RBP3.98□□□□□ -1.77
CD44-239ENST00000639002 DGLUCYQ7Z3D6 616 aa3.98□□□□□ -1.77
CD44-239ENST00000639002 PCDH20Q8N6Y1 951 aaKnown RBP3.98□□□□□ -1.77
CD44-239ENST00000639002 OR5R1Q8NH85 324 aa3.98□□□□□ -1.77
CD44-239ENST00000639002 GRAPLQ8TC17 118 aaPredicted RBP3.98□□□□□ -1.77
CD44-239ENST00000639002 GRAMD2BQ96HH9 432 aa3.98□□□□□ -1.77
CD44-239ENST00000639002 PPP1R13BQ96KQ4 1090 aa3.98□□□□□ -1.77
CD44-239ENST00000639002 ZSCAN31Q96LW9 406 aaPredicted RBP3.98□□□□□ -1.77
CD44-239ENST00000639002 KLHL15Q96M94 604 aa3.98□□□□□ -1.77
CD44-239ENST00000639002 ZNF583Q96ND8 569 aa3.98□□□□□ -1.77
CD44-239ENST00000639002 MPHOSPH8Q99549 860 aa3.98□□□□□ -1.77
CD44-239ENST00000639002 LOXL2Q9Y4K0 774 aa3.98□□□□□ -1.77
CD44-239ENST00000639002 COMMD10Q9Y6G5 202 aa3.98□□□□□ -1.77
CD44-239ENST00000639002 CEPT1Q9Y6K0 416 aa3.98□□□□□ -1.77
CD44-239ENST00000639002 SCINQ9Y6U3 715 aa3.98□□□□□ -1.77
CD44-239ENST00000639002 TEX13CA0A0J9YWL9 993 aa3.97□□□□□ -1.77
CD44-239ENST00000639002 A0A1B0GU03 582 aa3.97□□□□□ -1.77
CD44-239ENST00000639002 A0A1W2PQM1 296 aa3.97□□□□□ -1.77
CD44-239ENST00000639002 EIF3FO00303 357 aaPredicted RBP3.97□□□□□ -1.77
CD44-239ENST00000639002 WDR1O75083 606 aa3.97□□□□□ -1.77
CD44-239ENST00000639002 PRSS1P07477 247 aa3.97□□□□□ -1.77
CD44-239ENST00000639002 ZNF883P0CG24 379 aa3.97□□□□□ -1.77
CD44-239ENST00000639002 COX7A2P14406 83 aa3.97□□□□□ -1.77
CD44-239ENST00000639002 GNL1P36915 607 aaPredicted RBP3.97□□□□□ -1.77
CD44-239ENST00000639002 DCTP40126 519 aa3.97□□□□□ -1.77
CD44-239ENST00000639002 TAF6P49848 677 aa3.97□□□□□ -1.77
CD44-239ENST00000639002 RUNX1T1Q06455 604 aa3.97□□□□□ -1.77
CD44-239ENST00000639002 LCE3CQ5T5A8 94 aa3.97□□□□□ -1.77
CD44-239ENST00000639002 GGNBP1Q5YKI7 109 aa3.97□□□□□ -1.77
CD44-239ENST00000639002 LRRTM4Q86VH4 590 aa3.97□□□□□ -1.77
CD44-239ENST00000639002 BEST3Q8N1M1 668 aa3.97□□□□□ -1.77
CD44-239ENST00000639002 PIGTQ969N2 578 aa3.97□□□□□ -1.77
CD44-239ENST00000639002 POLR3CQ9BUI4 534 aaPredicted RBP3.97□□□□□ -1.77
CD44-239ENST00000639002 GPR63Q9BZJ6 419 aa3.97□□□□□ -1.77
CD44-239ENST00000639002 SEBOXQ9HB31 216 aaPredicted RBP3.97□□□□□ -1.77
CD44-239ENST00000639002 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.97□□□□□ -1.77
CD44-239ENST00000639002 PATE4P0C8F1 98 aa3.96□□□□□ -1.78
CD44-239ENST00000639002 GGT5P36269 586 aa3.96□□□□□ -1.78
CD44-239ENST00000639002 RPL24P83731 157 aaKnown RBP3.96□□□□□ -1.78
CD44-239ENST00000639002 ZNF234Q14588 700 aa3.96□□□□□ -1.78
CD44-239ENST00000639002 ARHGAP11AQ6P4F7 1023 aa3.96□□□□□ -1.78
CD44-239ENST00000639002 BRAT1Q6PJG6 821 aa3.96□□□□□ -1.78
CD44-239ENST00000639002 RAD9BQ6WBX8 426 aa3.96□□□□□ -1.78
CD44-239ENST00000639002 NRROSQ86YC3 692 aa3.96□□□□□ -1.78
CD44-239ENST00000639002 ACVR1CQ8NER5 493 aa3.96□□□□□ -1.78
CD44-239ENST00000639002 ZCCHC10Q8TBK6 192 aa3.96□□□□□ -1.78
CD44-239ENST00000639002 LGALS12Q96DT0 336 aa3.96□□□□□ -1.78
CD44-239ENST00000639002 MAELQ96JY0 434 aaKnown RBP3.96□□□□□ -1.78
CD44-239ENST00000639002 HERPUD2Q9BSE4 406 aa3.96□□□□□ -1.78
CD44-239ENST00000639002 H2AFJQ9BTM1 129 aa3.96□□□□□ -1.78
CD44-239ENST00000639002 FAF1Q9UNN5 650 aaPredicted RBP3.96□□□□□ -1.78
CD44-239ENST00000639002 MMP24Q9Y5R2 645 aa3.96□□□□□ -1.78
CD44-239ENST00000639002 SEC31AO94979 1220 aaKnown RBP3.95□□□□□ -1.78
CD44-239ENST00000639002 TUBBP07437 444 aa3.95□□□□□ -1.78
CD44-239ENST00000639002 IRF1P10914 325 aa3.95□□□□□ -1.78
CD44-239ENST00000639002 ALDH4A1P30038 563 aa3.95□□□□□ -1.78
CD44-239ENST00000639002 GNAQP50148 359 aa3.95□□□□□ -1.78
CD44-239ENST00000639002 TUBB4BP68371 445 aa3.95□□□□□ -1.78
CD44-239ENST00000639002 CAMK1Q14012 370 aa3.95□□□□□ -1.78
CD44-239ENST00000639002 ALG11Q2TAA5 492 aa3.95□□□□□ -1.78
CD44-239ENST00000639002 PRICKLE4Q2TBC4 344 aa3.95□□□□□ -1.78
CD44-239ENST00000639002 SIRPB2Q5JXA9 342 aa3.95□□□□□ -1.78
CD44-239ENST00000639002 PDSS1Q5T2R2 415 aa3.95□□□□□ -1.78
CD44-239ENST00000639002 FAM171BQ6P995 826 aa3.95□□□□□ -1.78
CD44-239ENST00000639002 PQLC2Q6ZP29 291 aa3.95□□□□□ -1.78
CD44-239ENST00000639002 C17orf77Q96MU5 243 aa3.95□□□□□ -1.78
CD44-239ENST00000639002 FKRPQ9H9S5 495 aa3.95□□□□□ -1.78
CD44-239ENST00000639002 GGA3Q9NZ52 723 aa3.95□□□□□ -1.78
CD44-239ENST00000639002 ERVK-11Q9UQG0 969 aa3.95□□□□□ -1.78
CD44-239ENST00000639002 PTPRCP08575 1304 aa3.95□□□□□ -1.78
CD44-239ENST00000639002 A0A1B0GVY2 172 aa3.94□□□□□ -1.78
CD44-239ENST00000639002 ANTXRLA6NF34 631 aa3.94□□□□□ -1.78
CD44-239ENST00000639002 ERI2A8K979 691 aaKnown RBP3.94□□□□□ -1.78
CD44-239ENST00000639002 DVL1O14640 695 aa3.94□□□□□ -1.78
CD44-239ENST00000639002 TNPO2O14787 897 aaKnown RBP3.94□□□□□ -1.78
CD44-239ENST00000639002 TBX6O95947 436 aaPredicted RBP3.94□□□□□ -1.78
CD44-239ENST00000639002 CNTFP26441 200 aa3.94□□□□□ -1.78
CD44-239ENST00000639002 GABRB2P47870 512 aa3.94□□□□□ -1.78
CD44-239ENST00000639002 MMP14P50281 582 aa3.94□□□□□ -1.78
CD44-239ENST00000639002 DVL1P1P54792 670 aaPredicted RBP3.94□□□□□ -1.78
CD44-239ENST00000639002 CSNK2A1P68400 391 aaPredicted RBP3.94□□□□□ -1.78
CD44-239ENST00000639002 PPIGQ13427 754 aaKnown RBP eCLIP3.94□□□□□ -1.78
CD44-239ENST00000639002 COL28A1Q2UY09 1125 aa3.94□□□□□ -1.78
CD44-239ENST00000639002 CCNYL2Q5T2Q4 361 aa3.94□□□□□ -1.78
CD44-239ENST00000639002 SLC46A3Q7Z3Q1 461 aa3.94□□□□□ -1.78
CD44-239ENST00000639002 NOTCH2NLQ7Z3S9 236 aa3.94□□□□□ -1.78
CD44-239ENST00000639002 ZNF485Q8NCK3 441 aa3.94□□□□□ -1.78
CD44-239ENST00000639002 CSNK2A3Q8NEV1 391 aa3.94□□□□□ -1.78
CD44-239ENST00000639002 TRIM58Q8NG06 486 aa3.94□□□□□ -1.78
CD44-239ENST00000639002 OR10V1Q8NGI7 309 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms