RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 IL12AP29459 219 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 CTSOP43234 321 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-209ENST00000635750 SLC13A2Q13183 592 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 PGM5Q15124 567 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 MAP1SQ66K74 1059 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-209ENST00000635750 PTF1AQ7RTS3 328 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 TMPRSS11BQ86T26 416 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 UNC5BQ8IZJ1 945 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 ABRAQ8N0Z2 381 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 DEFB106AQ8N104 65 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 OR4C6Q8NH72 309 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 RFKQ969G6 155 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 NXPE2Q96DL1 559 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 BORCS8Q96FH0 119 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 C8orf4Q9NR00 106 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 TMPRSS11EQ9UL52 423 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 SAMHD1Q9Y3Z3 626 aaKnown RBP5.55□□□□□ -1.52
SCN1A-209ENST00000635750 GMEB1Q9Y692 573 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 PPP1R3GB7ZBB8 358 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 HCN1O60741 890 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 IGKV5-2P06315 115 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 ERCC2P18074 760 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 GABRR2P28476 465 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 ASMTP46597 345 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 ADAM8P78325 824 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 ILF3Q12906 894 aaKnown RBP eCLIP5.55□□□□□ -1.52
SCN1A-209ENST00000635750 MTF1Q14872 753 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 CPTPQ5TA50 214 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 HECTD2Q5U5R9 776 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 ANO7Q6IWH7 933 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 TMEM17Q86X19 198 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 FAM129CQ86XR2 697 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 ZNF433Q8N7K0 673 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-209ENST00000635750 ZNF548Q8NEK5 533 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-209ENST00000635750 COQ8BQ96D53 544 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 OTUB2Q96DC9 234 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 SLC47A1Q96FL8 570 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 APOPT1Q96IL0 206 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 STRADBQ9C0K7 418 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 SLC40A1Q9NP59 571 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 SDHAF3Q9NRP4 125 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 CCDC59Q9P031 241 aaKnown RBP5.55□□□□□ -1.52
SCN1A-209ENST00000635750 ZNF639Q9UID6 485 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 RIMKLBQ9ULI2 386 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 OAS3Q9Y6K5 1087 aaKnown RBP5.55□□□□□ -1.52
SCN1A-209ENST00000635750 ROBO2Q9HCK4 1378 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 PSMD9O00233 223 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 CSDE1O75534 798 aaKnown RBP5.55□□□□□ -1.52
SCN1A-209ENST00000635750 KAT7O95251 611 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 RENP00797 406 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 CST1P01037 141 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 KLK3P07288 261 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-209ENST00000635750 SNRPB2P08579 225 aaKnown RBP5.55□□□□□ -1.52
SCN1A-209ENST00000635750 FOXK1P85037 733 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 BEX3Q00994 111 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 ST3GAL4Q11206 333 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 MED22Q15528 200 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 NEPROQ6NW34 567 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 CYP2R1Q6VVX0 501 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 CADM2Q8N3J6 435 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 C11orf65Q8NCR3 313 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 FEM1CQ96JP0 617 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 OR52E6Q96RD3 313 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 TDRD1Q9BXT4 1180 aaKnown RBP5.55□□□□□ -1.52
SCN1A-209ENST00000635750 HIPK3Q9H422 1215 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 PNPLA8Q9NP80 782 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 DUS2Q9NX74 493 aaKnown RBP5.55□□□□□ -1.52
SCN1A-209ENST00000635750 CDC14AQ9UNH5 594 aa5.55□□□□□ -1.52
SCN1A-209ENST00000635750 ZCCHC11Q5TAX3 1644 aaKnown RBP5.54□□□□□ -1.52
SCN1A-209ENST00000635750 ADCY10Q96PN6 1610 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 USP27XA6NNY8 438 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 PAPSS2O95340 614 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-209ENST00000635750 METTL18O95568 372 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 PRNPP04156 253 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 ZNF806P0C7X5 589 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 GSTT2BP0CG30 244 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 HSD17B2P37059 387 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 MC1RQ01726 317 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 ENPEPQ07075 957 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 TROAPQ12815 778 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 TRIM28Q13263 835 aaKnown RBP5.54□□□□□ -1.52
SCN1A-209ENST00000635750 IL18Q14116 193 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 DPYSQ14117 519 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 FAM189A2Q15884 450 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.54□□□□□ -1.523e-6■■■□□ 18.5
SCN1A-209ENST00000635750 NBPF12Q5TAG4 269 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-209ENST00000635750 DENND5AQ6IQ26 1287 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 GPR180Q86V85 440 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 SMG7Q92540 1137 aaKnown RBP5.54□□□□□ -1.52
SCN1A-209ENST00000635750 KCNJ9Q92806 393 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 ERGIC2Q96RQ1 377 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 C12orf4Q9NQ89 552 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 L1RE1Q9UN81 338 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 TMX2Q9Y320 296 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 PCDHGB1Q9Y5G3 927 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 ACKR2O00590 384 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 MEIS2O14770 477 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 FOXN1O15353 648 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 EPHX1P07099 455 aa5.54□□□□□ -1.52
SCN1A-209ENST00000635750 PGAM2P15259 253 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms