RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 MCOLN1Q9GZU1 580 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 TP63Q9H3D4 680 aaPredicted RBP10.81□□□□□ -0.68
UPF3A-212ENST00000619079 CASS4Q9NQ75 786 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 PDE10AQ9Y233 779 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 ZNF236Q9UL36 1845 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 WDR81Q562E7 1941 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 A0A087X1B8 175 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 B4GAT1O43505 415 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 NADKO95544 446 aaPredicted RBP10.8□□□□□ -0.68
UPF3A-212ENST00000619079 SUPT20HL2P0C7V6 817 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 BMP4P12644 408 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 STMN1P16949 149 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 SAT1P21673 171 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 EDNRBP24530 442 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 DNAJB2P25686 324 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 ATICP31939 592 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 CA8P35219 290 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 KRR1Q13601 381 aaKnown RBP10.8□□□□□ -0.68
UPF3A-212ENST00000619079 SELPLGQ14242 412 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 TSTD2Q5T7W7 516 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 PPP2R2DQ66LE6 453 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 PTRH1Q86Y79 214 aaKnown RBP10.8□□□□□ -0.68
UPF3A-212ENST00000619079 ZNF567Q8N184 647 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 AURKBQ96GD4 344 aaPredicted RBP10.8□□□□□ -0.68
UPF3A-212ENST00000619079 ELMO2Q96JJ3 720 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 KCTD15Q96SI1 283 aaPredicted RBP10.8□□□□□ -0.68
UPF3A-212ENST00000619079 C17orf80Q9BSJ5 609 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 TRMOQ9BU70 441 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 NOL6Q9H6R4 1146 aaKnown RBP10.8□□□□□ -0.68
UPF3A-212ENST00000619079 MARCH7Q9H992 704 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 NEK6Q9HC98 313 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 SEPT10Q9P0V9 454 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 HMGXB4Q9UGU5 601 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 FIS1Q9Y3D6 152 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 UGT2A1Q9Y4X1 527 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 TIMM22Q9Y584 194 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 A0A0J9YYE9 177 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 ENO2P09104 434 aaPredicted RBP10.8□□□□□ -0.68
UPF3A-212ENST00000619079 THRBP10828 461 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 BMP1P13497 986 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 NAT1P18440 290 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 ARSFP54793 590 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 TPD52P55327 224 aaPredicted RBP10.8□□□□□ -0.68
UPF3A-212ENST00000619079 CAPSQ13938 189 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 PAGE2BQ5JRK9 111 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 FAM209AQ5JX71 171 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 TUBA3EQ6PEY2 450 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 USP43Q70EL4 1123 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 DPH6Q7L8W6 267 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 PID1Q7Z2X4 250 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 CUZD1Q86UP6 607 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 TXNDC5Q8NBS9 432 aaKnown RBP10.8□□□□□ -0.68
UPF3A-212ENST00000619079 ACVR1CQ8NER5 493 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 RASSF5Q8WWW0 418 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 DACH2Q96NX9 599 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 GPR78Q96P69 363 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 DGCR6LQ9BY27 220 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 SOX17Q9H6I2 414 aaPredicted RBP10.8□□□□□ -0.68
UPF3A-212ENST00000619079 HMX1Q9NP08 348 aaPredicted RBP10.8□□□□□ -0.68
UPF3A-212ENST00000619079 KLQ9UEF7 1012 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 TSPAN16Q9UKR8 245 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 MAGED2Q9UNF1 606 aaPredicted RBP10.8□□□□□ -0.68
UPF3A-212ENST00000619079 USP3Q9Y6I4 520 aa10.8□□□□□ -0.68
UPF3A-212ENST00000619079 GOLGA8CPA6NN73 597 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 UBXN8O00124 270 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 NR5A2O00482 541 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 MFSD11O43934 449 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 TBC1D4O60343 1298 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 MAN1A2O60476 641 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 MSCO60682 206 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 NDUFS2O75306 463 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 GUCY1B2O75343 617 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 PTTG1O95997 202 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 KRT8P05787 483 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 CHRNB1P11230 501 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 HNRNPLP14866 589 aaKnown RBP eCLIP10.79□□□□□ -0.68
UPF3A-212ENST00000619079 GPX3P22352 226 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 HOXD11P31277 338 aaPredicted RBP10.79□□□□□ -0.68
UPF3A-212ENST00000619079 SHMT2P34897 504 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 SP4Q02446 784 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 DAG1Q14118 895 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 CRY1Q16526 586 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 PPP1R3AQ16821 1122 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 ZNF181Q2M3W8 571 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 KIF19Q2TAC6 998 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 ZNF484Q5JVG2 852 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 CATSPER4Q7RTX7 472 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 RETREG3Q86VR2 466 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 CCNYQ8ND76 341 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 OR9I1Q8NGQ6 314 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 OR13J1Q8NGT2 312 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 CENPIQ92674 756 aaPredicted RBP10.79□□□□□ -0.68
UPF3A-212ENST00000619079 CPB2Q96IY4 423 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 OSBPL2Q9H1P3 480 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 PDGFCQ9NRA1 345 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 KLHL8Q9P2G9 620 aaPredicted RBP10.79□□□□□ -0.68
UPF3A-212ENST00000619079 SATB2Q9UPW6 733 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 NAALAD2Q9Y3Q0 740 aa10.79□□□□□ -0.68
UPF3A-212ENST00000619079 MN1Q10571 1320 aaPredicted RBP10.79□□□□□ -0.68
UPF3A-212ENST00000619079 TCRBV5S2A0A599 114 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms