RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 GUCY2DQ02846 1103 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 LAMB3Q13751 1172 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 CCDC38Q502W7 563 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 PCID2Q5JVF3 399 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 ESRP1Q6NXG1 681 aaKnown RBP19.65■□□□□ 0.74
UPF3A-211ENST00000618700 ZDHHC24Q6UX98 284 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 NLRP8Q86W28 1048 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 SYT12Q8IV01 421 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 RGL4Q8IZJ4 473 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 PELI3Q8N2H9 469 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 MPP5Q8N3R9 675 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 GPR26Q8NDV2 337 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 OR4K2Q8NGD2 314 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 OR13C4Q8NGS5 318 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 ART4Q93070 314 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 SCAMP4Q969E2 229 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 PLEKHG4BQ96PX9 1271 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 MYOCQ99972 504 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 MIR1-1HGQ9H1L0 117 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 RAD18Q9NS91 495 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 TMEM74BQ9NUR3 256 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 CD84Q9UIB8 345 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 RIMKLBQ9ULI2 386 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 CA5BQ9Y2D0 317 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 PKP3Q9Y446 797 aa19.65■□□□□ 0.74
UPF3A-211ENST00000618700 ATXN2Q99700 1313 aaKnown RBP19.65■□□□□ 0.74
UPF3A-211ENST00000618700 BPTFQ12830 3046 aa19.64■□□□□ 0.73
UPF3A-211ENST00000618700 A0A1W2PR77 199 aa19.64■□□□□ 0.73
UPF3A-211ENST00000618700 STX7O15400 261 aaKnown RBP19.64■□□□□ 0.73
UPF3A-211ENST00000618700 SOD1P00441 154 aa19.64■□□□□ 0.73
UPF3A-211ENST00000618700 DPP6P42658 865 aa19.64■□□□□ 0.73
UPF3A-211ENST00000618700 RACK1P63244 317 aaKnown RBP19.64■□□□□ 0.73
UPF3A-211ENST00000618700 CBLBQ13191 982 aa19.64■□□□□ 0.73
UPF3A-211ENST00000618700 PTPRCAPQ14761 206 aa19.64■□□□□ 0.73
UPF3A-211ENST00000618700 FNBP1LQ5T0N5 605 aa19.64■□□□□ 0.73
UPF3A-211ENST00000618700 ZDHHC20Q5W0Z9 365 aa19.64■□□□□ 0.73
UPF3A-211ENST00000618700 KYAT3Q6YP21 454 aaKnown RBP19.64■□□□□ 0.73
UPF3A-211ENST00000618700 ABI3BPQ7Z7G0 1075 aa19.64■□□□□ 0.73
UPF3A-211ENST00000618700 ZCCHC9Q8N567 271 aaKnown RBP19.64■□□□□ 0.73
UPF3A-211ENST00000618700 PLA2G15Q8NCC3 412 aa19.64■□□□□ 0.73
UPF3A-211ENST00000618700 PPHLN1Q8NEY8 458 aaKnown RBP19.64■□□□□ 0.73
UPF3A-211ENST00000618700 STYXQ8WUJ0 223 aa19.64■□□□□ 0.73
UPF3A-211ENST00000618700 PEX13Q92968 403 aa19.64■□□□□ 0.73
UPF3A-211ENST00000618700 AP2M1Q96CW1 435 aa19.64■□□□□ 0.73
UPF3A-211ENST00000618700 DNAJC1Q96KC8 554 aaKnown RBP19.64■□□□□ 0.73
UPF3A-211ENST00000618700 BMFQ96LC9 184 aa19.64■□□□□ 0.73
UPF3A-211ENST00000618700 HINFPQ9BQA5 517 aa19.64■□□□□ 0.73
UPF3A-211ENST00000618700 KIFC1Q9BW19 673 aa19.64■□□□□ 0.73
UPF3A-211ENST00000618700 FAM83DQ9H4H8 585 aa19.64■□□□□ 0.73
UPF3A-211ENST00000618700 MRM3Q9HC36 420 aaKnown RBP19.64■□□□□ 0.73
UPF3A-211ENST00000618700 EPB41L5Q9HCM4 733 aa19.64■□□□□ 0.73
UPF3A-211ENST00000618700 BPIFA1Q9NP55 256 aa19.64■□□□□ 0.73
UPF3A-211ENST00000618700 NLE1Q9NVX2 485 aaPredicted RBP19.64■□□□□ 0.73
UPF3A-211ENST00000618700 WDR70Q9NW82 654 aa19.64■□□□□ 0.73
UPF3A-211ENST00000618700 PCDHGA5Q9Y5G8 931 aa19.64■□□□□ 0.73
UPF3A-211ENST00000618700 HS3ST3A1Q9Y663 406 aa19.64■□□□□ 0.73
UPF3A-211ENST00000618700 POM121BA6NF01 834 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 H0Y8X5 98 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 K7ESM1 405 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 GAPDHSO14556 408 aaPredicted RBP19.63■□□□□ 0.73
UPF3A-211ENST00000618700 SLU7O95391 586 aaKnown RBP19.63■□□□□ 0.73
UPF3A-211ENST00000618700 PCCBP05166 539 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 TEAD1P28347 426 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 SPAM1P38567 509 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 CLDN2P57739 230 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 CAV1Q03135 178 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 ACVR1Q04771 509 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 HIF1AQ16665 826 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 MSS51Q4VC12 460 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 DNAJC21Q5F1R6 531 aaKnown RBP19.63■□□□□ 0.73
UPF3A-211ENST00000618700 TSTD2Q5T7W7 516 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 KDM7AQ6ZMT4 941 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 NLRP9Q7RTR0 991 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 IQCHQ86VS3 1027 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 OR13J1Q8NGT2 312 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 FBXO25Q8TCJ0 367 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 DTX3LQ8TDB6 740 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 PIGKQ92643 395 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 SIGLEC10Q96LC7 697 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 ZNF778Q96MU6 729 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 PWWP2AQ96N64 755 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 RIOK2Q9BVS4 552 aaKnown RBP19.63■□□□□ 0.73
UPF3A-211ENST00000618700 IL26Q9NPH9 171 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 GPR27Q9NS67 375 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 SUSD2Q9UGT4 822 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 SOX13Q9UN79 622 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 FRYLO94915 3013 aa19.63■□□□□ 0.73
UPF3A-211ENST00000618700 A0A1B0GTW7 788 aa19.62■□□□□ 0.73
UPF3A-211ENST00000618700 SDR42E2A6NKP2 422 aa19.62■□□□□ 0.73
UPF3A-211ENST00000618700 A6NNZ2 444 aa19.62■□□□□ 0.73
UPF3A-211ENST00000618700 H7C0S8 307 aa19.62■□□□□ 0.73
UPF3A-211ENST00000618700 FPGTO14772 594 aa19.62■□□□□ 0.73
UPF3A-211ENST00000618700 BCAT2O15382 392 aaPredicted RBP19.62■□□□□ 0.73
UPF3A-211ENST00000618700 WNT1P04628 370 aa19.62■□□□□ 0.73
UPF3A-211ENST00000618700 TSHRP16473 764 aa19.62■□□□□ 0.73
UPF3A-211ENST00000618700 TRIM23P36406 574 aa19.62■□□□□ 0.73
UPF3A-211ENST00000618700 HADHAP40939 763 aa19.62■□□□□ 0.73
UPF3A-211ENST00000618700 PFN3P60673 137 aa19.62■□□□□ 0.73
UPF3A-211ENST00000618700 ALS2CLQ60I27 953 aa19.62■□□□□ 0.73
UPF3A-211ENST00000618700 PNCKQ6P2M8 343 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms