RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ZNF460Q14592 562 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 TCEA2Q15560 299 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 RFX4Q33E94 735 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 INTS6LQ5JSJ4 861 aaKnown RBP13.99□□□□□ -0.17
CPSF1-212ENST00000616140 ZYG11AQ6WRX3 759 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 SLC51AQ86UW1 340 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 ZNF557Q8N988 423 aaPredicted RBP13.99□□□□□ -0.17
CPSF1-212ENST00000616140 OR2T34Q8NGX1 318 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 OR2T3Q8NH03 318 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 MCRS1Q96EZ8 462 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 FTHL17Q9BXU8 183 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 MAPRE3Q9UPY8 281 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 TCAF1Q9Y4C2 921 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 TRIM17Q9Y577 477 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 CLDN11O75508 207 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 ACADMP11310 421 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 RHOQP17081 205 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 CCNCP24863 283 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 AQP1P29972 269 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 CYP20A1Q6UW02 462 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 TMEM192Q8IY95 271 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 POC5Q8NA72 575 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 GLIS1Q8NBF1 620 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 PSMA8Q8TAA3 256 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 PTCD2Q8WV60 388 aaKnown RBP13.99□□□□□ -0.17
CPSF1-212ENST00000616140 ZNF358Q9NW07 568 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 POMPQ9Y244 141 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 FER1L4A9Z1Z3 1794 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 TRAV19A0A0A6YYK7 116 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 LIN7AO14910 233 aaPredicted RBP13.98□□□□□ -0.17
CPSF1-212ENST00000616140 MSCO60682 206 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 LGR5O75473 907 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 BMP10O95393 424 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 PRKAR2AP13861 404 aaKnown RBP13.98□□□□□ -0.17
CPSF1-212ENST00000616140 GRIA1P42261 906 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 GNPDA1P46926 289 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 DAOAP59103 153 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 STX4Q12846 297 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 RAET1GQ6H3X3 334 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 ARMC8Q8IUR7 673 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 NAT8LQ8N9F0 302 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 NELL1Q92832 810 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 SLC25A51Q9H1U9 297 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.98□□□□□ -0.17
CPSF1-212ENST00000616140 TCRBV7S3A2A0A539 114 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 EIF2S1P05198 315 aaKnown RBP13.98□□□□□ -0.17
CPSF1-212ENST00000616140 PSMA3P25788 255 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 ASPAP45381 313 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 GPR1P46091 355 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 INHBEP58166 350 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 PPP1R15BQ5SWA1 713 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 UXS1Q8NBZ7 420 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 C10orf82Q8WW14 230 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 SLCO2A1Q92959 643 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 USP7Q93009 1102 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 MAGEB10Q96LZ2 347 aaPredicted RBP13.98□□□□□ -0.17
CPSF1-212ENST00000616140 GSTK1Q9Y2Q3 226 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 GUCY1B2O75343 617 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 TCEA3O75764 348 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 AMHP03971 560 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 CES1P23141 567 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 NTSP30990 170 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 IDH3AP50213 366 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 RABGGTBP53611 331 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 CBR4Q8N4T8 237 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 ITCHQ96J02 903 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 ZNF317Q96PQ6 595 aaPredicted RBP13.98□□□□□ -0.17
CPSF1-212ENST00000616140 UNC93B1Q9H1C4 597 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 RHBGQ9H310 441 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 ETAA1Q9NY74 926 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 FBXO10Q9UK96 956 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 ERAL1O75616 437 aaKnown RBP13.98□□□□□ -0.17
CPSF1-212ENST00000616140 SLC25A14O95258 325 aaPredicted RBP13.98□□□□□ -0.17
CPSF1-212ENST00000616140 FAM110CQ1W6H9 321 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 VMP1Q96GC9 406 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 BRD9Q9H8M2 597 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 ZFYVE1Q9HBF4 777 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 ASAH2Q9NR71 780 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 THG1LQ9NWX6 298 aaKnown RBP13.98□□□□□ -0.17
CPSF1-212ENST00000616140 FETUBQ9UGM5 382 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 DMTF1Q9Y222 760 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 PCDHGC4Q9Y5F7 938 aa13.98□□□□□ -0.17
CPSF1-212ENST00000616140 FTH1P02794 183 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 UMPSP11172 480 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 GUCA1AP43080 201 aaPredicted RBP13.97□□□□□ -0.17
CPSF1-212ENST00000616140 CSNK2BP67870 215 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 PTSQ03393 145 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 PARP15Q460N3 678 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 C11orf88Q6PI97 169 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 SERPINA13PQ6UXR4 307 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 HEXDCQ8WVB3 486 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 FBXL18Q96ME1 805 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 ERGIC3Q9Y282 383 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 RAI2Q9Y5P3 530 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 MATN3O15232 486 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 NR2F1P10589 423 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 ENPEPQ07075 957 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 COX10Q12887 443 aa13.97□□□□□ -0.17
CPSF1-212ENST00000616140 EIF2B5Q13144 721 aaKnown RBP13.97□□□□□ -0.17
CPSF1-212ENST00000616140 DPYSQ14117 519 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms