RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 POLR1CO15160 346 aaPredicted RBP6.27□□□□□ -1.41
CUX1-220ENST00000607092 INSIG1O15503 277 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 BUB1BO60566 1050 aaPredicted RBP6.27□□□□□ -1.41
CUX1-220ENST00000607092 VPS4BO75351 444 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 GFPT2O94808 682 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 HEXIM1O94992 359 aaKnown RBP6.27□□□□□ -1.41
CUX1-220ENST00000607092 CPP00450 1065 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 CEACAM5P06731 702 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 ANKRD34CP0C6C1 535 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 UNGP13051 313 aaPredicted RBP6.27□□□□□ -1.41
CUX1-220ENST00000607092 ZNF30P17039 623 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 ITIH2P19823 946 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 SERPINB6P35237 376 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 ADCY8P40145 1251 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 ACTR1BP42025 376 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 GPR1P46091 355 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 GNPDA1P46926 289 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 CD97P48960 835 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 PAPOLAP51003 745 aaKnown RBP6.27□□□□□ -1.41
CUX1-220ENST00000607092 CDH6P55285 790 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 MAZP56270 477 aaKnown RBP6.27□□□□□ -1.41
CUX1-220ENST00000607092 ACTR1AP61163 376 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 CYP4F2P78329 520 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 CTBSQ01459 385 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 FMO1Q01740 532 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 CDC20Q12834 499 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 RALGDSQ12967 914 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 LBRQ14739 615 aaKnown RBP6.27□□□□□ -1.41
CUX1-220ENST00000607092 KIR2DS5Q14953 304 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 TCEA2Q15560 299 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 CLEC16AQ2KHT3 1053 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 C4orf17Q53FE4 359 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 C2CD6Q53TS8 623 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 MIIPQ5JXC2 388 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 ARMC12Q5T9G4 340 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 TCTN3Q6NUS6 607 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 SLC30A9Q6PML9 568 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 CLEC18BQ6UXF7 455 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 ADAMTSL4Q6UY14 1074 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 RFX8Q6ZV50 586 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 ZNF765Q7L2R6 523 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 SLC9B2Q86UD5 537 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 PTRH1Q86Y79 214 aaKnown RBP6.27□□□□□ -1.41
CUX1-220ENST00000607092 HPS6Q86YV9 775 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 LURAP1LQ8IV03 231 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 PLA2G15Q8NCC3 412 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 TSEN2Q8NCE0 465 aaKnown RBP6.27□□□□□ -1.41
CUX1-220ENST00000607092 CLEC18CQ8NCF0 446 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 RCBTB1Q8NDN9 531 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 EXD1Q8NHP7 514 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 JOSD2Q8TAC2 188 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 DTD2Q96FN9 168 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 SCARF2Q96GP6 870 aaPredicted RBP6.27□□□□□ -1.41
CUX1-220ENST00000607092 COQ10AQ96MF6 247 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 FRMD8Q9BZ67 464 aaPredicted RBP6.27□□□□□ -1.41
CUX1-220ENST00000607092 CAAP1Q9H8G2 361 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 ZWILCHQ9H900 591 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 RMI1Q9H9A7 625 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 SARS2Q9NP81 518 aaKnown RBP6.27□□□□□ -1.41
CUX1-220ENST00000607092 MRPL40Q9NQ50 206 aaKnown RBP6.27□□□□□ -1.41
CUX1-220ENST00000607092 PRDM8Q9NQV8 689 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 SPATS2LQ9NUQ6 558 aaKnown RBP6.27□□□□□ -1.41
CUX1-220ENST00000607092 SEPT11Q9NVA2 429 aaKnown RBP6.27□□□□□ -1.41
CUX1-220ENST00000607092 PARVAQ9NVD7 372 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 VPS18Q9P253 973 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 B4GALT6Q9UBX8 382 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 SUFUQ9UMX1 484 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 VPS4AQ9UN37 437 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 AP4E1Q9UPM8 1137 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 POLHQ9Y253 713 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 MAN2B2Q9Y2E5 1009 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 TMEM184BQ9Y519 407 aaPredicted RBP6.27□□□□□ -1.41
CUX1-220ENST00000607092 SCN8AQ9UQD0 1980 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 NBPF19A0A087WUL8 3843 aa6.27□□□□□ -1.41
CUX1-220ENST00000607092 ARHGEF17Q96PE2 2063 aaPredicted RBP6.26□□□□□ -1.41
CUX1-220ENST00000607092 ICE1Q9Y2F5 2266 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 RGSL1A5PLK6 1076 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 GOLGA6CA6NDK9 693 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 GOLGA6BA6NDN3 693 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 PRR19A6NJB7 356 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 J3KR12 359 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 DFFAO00273 331 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 TRAFD1O14545 582 aaPredicted RBP6.26□□□□□ -1.41
CUX1-220ENST00000607092 CCP110O43303 1012 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 HTRA2O43464 458 aaPredicted RBP6.26□□□□□ -1.41
CUX1-220ENST00000607092 PRPSAP2O60256 369 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 RFPL1O75677 317 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 STK17BO94768 372 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 CCNYL3P0C7X3 344 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 GOLGA6DP0CG33 693 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 ARL4AP40617 200 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 STAT5AP42229 794 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 POLR2FP61218 127 aaKnown RBP6.26□□□□□ -1.41
CUX1-220ENST00000607092 CDK3Q00526 305 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 HHEXQ03014 270 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 IL11RAQ14626 422 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 CNGA3Q16281 694 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 SKIDA1Q1XH10 827 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 TCP11X2Q5H9J9 407 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 ERMARDQ5T6L9 678 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms