RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	KDM1B	Q8NB78	822 aa		11.7	□□□□□ -0.54
VRK3-223	ENST00000601341	PPHLN1	Q8NEY8	458 aa	Known RBP	11.7	□□□□□ -0.54
VRK3-223	ENST00000601341	CYB5D2	Q8WUJ1	264 aa		11.7	□□□□□ -0.54
VRK3-223	ENST00000601341	UCMA	Q8WVF2	138 aa		11.7	□□□□□ -0.54
VRK3-223	ENST00000601341	SORCS1	Q8WY21	1168 aa		11.7	□□□□□ -0.54
VRK3-223	ENST00000601341	RMDN1	Q96DB5	314 aa		11.7	□□□□□ -0.54
VRK3-223	ENST00000601341	NSMCE3	Q96MG7	304 aa		11.7	□□□□□ -0.54
VRK3-223	ENST00000601341	KIFC1	Q9BW19	673 aa		11.7	□□□□□ -0.54
VRK3-223	ENST00000601341	ATP13A3	Q9H7F0	1226 aa		11.7	□□□□□ -0.54
VRK3-223	ENST00000601341	CHRAC1	Q9NRG0	131 aa		11.7	□□□□□ -0.54
VRK3-223	ENST00000601341	SOX13	Q9UN79	622 aa		11.7	□□□□□ -0.54
VRK3-223	ENST00000601341	APOBEC2	Q9Y235	224 aa	Known RBP	11.7	□□□□□ -0.54
VRK3-223	ENST00000601341	ANKRD6	Q9Y2G4	727 aa		11.7	□□□□□ -0.54
VRK3-223	ENST00000601341	SPTBN5	Q9NRC6	3674 aa	Known RBP	11.7	□□□□□ -0.54
VRK3-223	ENST00000601341	ZCWPW2	A0A1B0GU75	182 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	HEATR9	A2RTY3	570 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	KIF1C	O43896	1103 aa	Known RBP	11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	SOCS5	O75159	536 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	ENTPD5	O75356	428 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	POP4	O95707	220 aa	Known RBP	11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	PRL	P01236	227 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	PRDX6	P30041	224 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	GRIA2	P42262	883 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	CSRP3	P50461	194 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	RPL26	P61254	145 aa	Known RBP	11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	MESP2	Q0VG99	397 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	TRAF2	Q12933	501 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	LAMB3	Q13751	1172 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	GRM3	Q14832	879 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	TAF11	Q15544	211 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	PTPRN	Q16849	979 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	AAK1	Q2M2I8	961 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	ANKRD20A4	Q4UJ75	823 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	PKN3	Q6P5Z2	889 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	CLEC14A	Q86T13	490 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	TTC7B	Q86TV6	843 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	ALYREF	Q86V81	257 aa	Known RBP	11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	PHTF2	Q8N3S3	785 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	OR6K2	Q8NGY2	324 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	FRS2	Q8WU20	508 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	PDCD6IP	Q8WUM4	868 aa	Known RBP	11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	STMN2	Q93045	179 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	TUBGCP5	Q96RT8	1024 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	TRIM56	Q9BRZ2	755 aa	Known RBP	11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	CPEB1	Q9BZB8	566 aa	Known RBP	11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	KCNK12	Q9HB15	430 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	MRM3	Q9HC36	420 aa	Known RBP	11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	GPAM	Q9HCL2	828 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	TRPV5	Q9NQA5	729 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	LIMD1	Q9UGP4	676 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	TCAF1	Q9Y4C2	921 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	KIF26A	Q9ULI4	1882 aa	Predicted RBP	11.69	□□□□□ -0.54
VRK3-223	ENST00000601341		B2RBV5	119 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	ANKRD66	B4E2M5	251 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	BNIP3L	O60238	219 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	KAT7	O95251	611 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	APOD	P05090	189 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	RPSA	P08865	295 aa	Known RBP	11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	COL6A2	P12110	1019 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	SERPINA4	P29622	427 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	CCNH	P51946	323 aa	Predicted RBP	11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	SLC34A1	Q06495	639 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	ILF2	Q12905	390 aa	Known RBP	11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	TUBB3	Q13509	450 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	GALNT3	Q14435	633 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	SMAD2	Q15796	467 aa	Known RBP	11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	LEXM	Q3ZCV2	418 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	KHDC1	Q4VXA5	237 aa	Known RBP	11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	ACSBG2	Q5FVE4	666 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	ARMC12	Q5T9G4	340 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	PDPK2P	Q6A1A2	396 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	DPY19L3	Q6ZPD9	716 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341		Q6ZVU0	165 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	CAMK1D	Q8IU85	385 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	LMNTD2	Q8IXW0	634 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	LPCAT1	Q8NF37	534 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	OR2A12	Q8NGT7	310 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	MYO19	Q96H55	970 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	RILP	Q96NA2	401 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	RANBP9	Q96S59	729 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	C20orf27	Q9GZN8	174 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	SNX15	Q9NRS6	342 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	PCDHB9	Q9Y5E1	797 aa		11.69	□□□□□ -0.54
VRK3-223	ENST00000601341	TTC34	A8MYJ7	566 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	WASH3P	C4AMC7	463 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	SLC22A2	O15244	555 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	HTRA2	O43464	458 aa	Predicted RBP	11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	FZD6	O60353	706 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	CIB2	O75838	187 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	PGLS	O95336	258 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	PSMG1	O95456	288 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	PRKCG	P05129	697 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	PDHA1	P08559	390 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	RALB	P11234	206 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	CPA3	P15088	417 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	EPHB1	P54762	984 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	ABCE1	P61221	599 aa	Known RBP	11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	MSLN	Q13421	630 aa	Predicted RBP	11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	BLMH	Q13867	455 aa		11.68	□□□□□ -0.54
VRK3-223	ENST00000601341	SEPT6	Q14141	434 aa		11.68	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms