RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 CARD9Q9H257 536 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 PHPT1Q9NRX4 125 aaPredicted RBP16.09■□□□□ 0.17
TRIM28-213ENST00000598355 KLK13Q9UKR3 277 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 MSRB2Q9Y3D2 182 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 FREM2Q5SZK8 3169 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 BPTFQ12830 3046 aa16.08■□□□□ 0.17
TRIM28-213ENST00000598355 EPG5Q9HCE0 2579 aa16.08■□□□□ 0.17
TRIM28-213ENST00000598355 PRSS38A1L453 326 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 PDE2AO00408 941 aaPredicted RBP16.08■□□□□ 0.16
TRIM28-213ENST00000598355 PMPCBO75439 489 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 PYGLP06737 847 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 CELA2BP08218 269 aaPredicted RBP16.08■□□□□ 0.16
TRIM28-213ENST00000598355 CDK4P11802 303 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 SPINK2P20155 84 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 PCSK7Q16549 785 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 C6orf132Q5T0Z8 1188 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 FAXCQ5TGI0 409 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 RAET1GQ6H3X3 334 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 LVRNQ6Q4G3 990 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 TMPRSS7Q7RTY8 843 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 PID1Q7Z2X4 250 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 TMC3Q7Z5M5 1100 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 HID1Q8IV36 788 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 LMX1AQ8TE12 382 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 GATA6Q92908 595 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 SCAMP4Q969E2 229 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 TSACCQ96A04 125 aaPredicted RBP16.08■□□□□ 0.16
TRIM28-213ENST00000598355 AP2M1Q96CW1 435 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 COX14Q96I36 57 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 APOLD1Q96LR9 279 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 SPATA13Q96N96 652 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 C10orf88Q9H8K7 445 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 UBP1Q9NZI7 540 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 SLC17A4Q9Y2C5 497 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 R3HDM2Q9Y2K5 976 aaKnown RBP16.08■□□□□ 0.16
TRIM28-213ENST00000598355 PPP2R2CQ9Y2T4 447 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 ZNF711Q9Y462 761 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 USP24Q9UPU5 2620 aa16.08■□□□□ 0.16
TRIM28-213ENST00000598355 TCRBV7S2A1N4TA0A589 114 aa16.07■□□□□ 0.16
TRIM28-213ENST00000598355 GOLGA6L9A6NEM1 432 aa16.07■□□□□ 0.16
TRIM28-213ENST00000598355 NRDCO43847 1150 aa16.07■□□□□ 0.16
TRIM28-213ENST00000598355 CEACAM5P06731 702 aa16.07■□□□□ 0.16
TRIM28-213ENST00000598355 ANKRD20A2Q5SQ80 823 aa16.07■□□□□ 0.16
TRIM28-213ENST00000598355 ANKRD20A1Q5TYW2 823 aa16.07■□□□□ 0.16
TRIM28-213ENST00000598355 ANKRD20A3Q5VUR7 823 aa16.07■□□□□ 0.16
TRIM28-213ENST00000598355 ITPRIPL1Q6GPH6 555 aa16.07■□□□□ 0.16
TRIM28-213ENST00000598355 RTP4Q96DX8 246 aa16.07■□□□□ 0.16
TRIM28-213ENST00000598355 PDLIM2Q96JY6 352 aa16.07■□□□□ 0.16
TRIM28-213ENST00000598355 SRPK1Q96SB4 655 aaKnown RBP16.07■□□□□ 0.16
TRIM28-213ENST00000598355 AGAP2Q99490 1192 aa16.07■□□□□ 0.16
TRIM28-213ENST00000598355 FAM118BQ9BPY3 351 aa16.07■□□□□ 0.16
TRIM28-213ENST00000598355 CDH19Q9H159 772 aa16.07■□□□□ 0.16
TRIM28-213ENST00000598355 ZFYVE1Q9HBF4 777 aa16.07■□□□□ 0.16
TRIM28-213ENST00000598355 LZTFL1Q9NQ48 299 aa16.07■□□□□ 0.16
TRIM28-213ENST00000598355 MRPL40Q9NQ50 206 aaKnown RBP16.07■□□□□ 0.16
TRIM28-213ENST00000598355 PKD2L2Q9NZM6 624 aa16.07■□□□□ 0.16
TRIM28-213ENST00000598355 NCKIPSDQ9NZQ3 722 aa16.07■□□□□ 0.16
TRIM28-213ENST00000598355 RSPH14Q9UHP6 348 aa16.07■□□□□ 0.16
TRIM28-213ENST00000598355 CD84Q9UIB8 345 aa16.07■□□□□ 0.16
TRIM28-213ENST00000598355 SPO11Q9Y5K1 396 aa16.07■□□□□ 0.16
TRIM28-213ENST00000598355 C5orf60A6NFR6 353 aa16.06■□□□□ 0.16
TRIM28-213ENST00000598355 GOLGA8CPA6NN73 597 aa16.06■□□□□ 0.16
TRIM28-213ENST00000598355 KCNN4O15554 427 aa16.06■□□□□ 0.16
TRIM28-213ENST00000598355 FUCA1P04066 466 aa16.06■□□□□ 0.16
TRIM28-213ENST00000598355 GP1BAP07359 652 aa16.06■□□□□ 0.16
TRIM28-213ENST00000598355 IVLP07476 585 aa16.06■□□□□ 0.16
TRIM28-213ENST00000598355 HLA-DPA1P20036 260 aa16.06■□□□□ 0.16
TRIM28-213ENST00000598355 ADRA1AP35348 466 aa16.06■□□□□ 0.16
TRIM28-213ENST00000598355 CHRNA4P43681 627 aa16.06■□□□□ 0.16
TRIM28-213ENST00000598355 GPR1P46091 355 aa16.06■□□□□ 0.16
TRIM28-213ENST00000598355 C1orf61Q13536 156 aa16.06■□□□□ 0.16
TRIM28-213ENST00000598355 ELOCQ15369 112 aa16.06■□□□□ 0.16
TRIM28-213ENST00000598355 SLC1A5Q15758 541 aa16.06■□□□□ 0.16
TRIM28-213ENST00000598355 DEFB133Q30KQ1 61 aa16.06■□□□□ 0.16
TRIM28-213ENST00000598355 HS1BP3Q53T59 392 aa16.06■□□□□ 0.16
TRIM28-213ENST00000598355 SLC35F3Q8IY50 421 aa16.06■□□□□ 0.16
TRIM28-213ENST00000598355 TTC30BQ8N4P2 665 aa16.06■□□□□ 0.16
TRIM28-213ENST00000598355 TRIM58Q8NG06 486 aa16.06■□□□□ 0.16
TRIM28-213ENST00000598355 CCHCR1Q8TD31 782 aa16.06■□□□□ 0.16
TRIM28-213ENST00000598355 ALS2CR12Q96Q35 445 aa16.06■□□□□ 0.16
TRIM28-213ENST00000598355 FERMT1Q9BQL6 677 aa16.06■□□□□ 0.16
TRIM28-213ENST00000598355 RIOK2Q9BVS4 552 aaKnown RBP16.06■□□□□ 0.16
TRIM28-213ENST00000598355 CNOT6Q9ULM6 557 aaKnown RBP16.06■□□□□ 0.16
TRIM28-213ENST00000598355 EME2A4GXA9 379 aaPredicted RBP16.05■□□□□ 0.16
TRIM28-213ENST00000598355 FADS2P1A8MWK0 482 aa16.05■□□□□ 0.16
TRIM28-213ENST00000598355 YY2O15391 372 aa16.05■□□□□ 0.16
TRIM28-213ENST00000598355 ANXA9O76027 345 aa16.05■□□□□ 0.16
TRIM28-213ENST00000598355 TNFP01375 233 aa16.05■□□□□ 0.16
TRIM28-213ENST00000598355 FGF1P05230 155 aa16.05■□□□□ 0.16
TRIM28-213ENST00000598355 PIRTP0C851 137 aa16.05■□□□□ 0.16
TRIM28-213ENST00000598355 PSMB4P28070 264 aa16.05■□□□□ 0.16
TRIM28-213ENST00000598355 HMGCLP35914 325 aa16.05■□□□□ 0.16
TRIM28-213ENST00000598355 GEMP55040 296 aa16.05■□□□□ 0.16
TRIM28-213ENST00000598355 OASLQ15646 514 aaKnown RBP16.05■□□□□ 0.16
TRIM28-213ENST00000598355 SIRPB2Q5JXA9 342 aa16.05■□□□□ 0.16
TRIM28-213ENST00000598355 SEL1L2Q5TEA6 688 aa16.05■□□□□ 0.16
TRIM28-213ENST00000598355 PDPK2PQ6A1A2 396 aa16.05■□□□□ 0.16
TRIM28-213ENST00000598355 DARS2Q6PI48 645 aaKnown RBP16.05■□□□□ 0.16
TRIM28-213ENST00000598355 DHRS13Q6UX07 377 aa16.05■□□□□ 0.16
TRIM28-213ENST00000598355 RANBP10Q6VN20 620 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms