RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 FUBP1Q96AE4 644 aaKnown RBP11.06□□□□□ -0.64
LIG1-211ENST00000596457 LRRC45Q96CN5 670 aa11.06□□□□□ -0.64
LIG1-211ENST00000596457 WDR92Q96MX6 357 aa11.06□□□□□ -0.64
LIG1-211ENST00000596457 OSBPL9Q96SU4 736 aa11.06□□□□□ -0.64
LIG1-211ENST00000596457 AGAP2Q99490 1192 aa11.06□□□□□ -0.64
LIG1-211ENST00000596457 TBL1YQ9BQ87 522 aa11.06□□□□□ -0.64
LIG1-211ENST00000596457 RIOK2Q9BVS4 552 aaKnown RBP11.06□□□□□ -0.64
LIG1-211ENST00000596457 LGR4Q9BXB1 951 aa11.06□□□□□ -0.64
LIG1-211ENST00000596457 AP1M1Q9BXS5 423 aa11.06□□□□□ -0.64
LIG1-211ENST00000596457 FRMD8P1Q9BZ68 369 aaPredicted RBP11.06□□□□□ -0.64
LIG1-211ENST00000596457 TCEAL2Q9H3H9 227 aaPredicted RBP11.06□□□□□ -0.64
LIG1-211ENST00000596457 MAGEE1Q9HCI5 957 aa11.06□□□□□ -0.64
LIG1-211ENST00000596457 UCKL1Q9NWZ5 548 aa11.06□□□□□ -0.64
LIG1-211ENST00000596457 KCTD5Q9NXV2 234 aa11.06□□□□□ -0.64
LIG1-211ENST00000596457 SMARCAL1Q9NZC9 954 aa11.06□□□□□ -0.64
LIG1-211ENST00000596457 KLQ9UEF7 1012 aa11.06□□□□□ -0.64
LIG1-211ENST00000596457 KLF15Q9UIH9 416 aa11.06□□□□□ -0.64
LIG1-211ENST00000596457 PCDHGB2Q9Y5G2 931 aa11.06□□□□□ -0.64
LIG1-211ENST00000596457 PCNX2A6NKB5 2137 aa11.06□□□□□ -0.64
LIG1-211ENST00000596457 ASCC3Q8N3C0 2202 aaKnown RBP11.05□□□□□ -0.64
LIG1-211ENST00000596457 TOR1BO14657 336 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 AURKAO14965 403 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 ZNF185O15231 689 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 YKT6O15498 198 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 PIAS2O75928 621 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 ASMTLO95671 621 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 TNFP01375 233 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 CSF2P04141 144 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 ATXN1LP0C7T5 689 aaKnown RBP11.05□□□□□ -0.64
LIG1-211ENST00000596457 CTSEP14091 401 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 TSHRP16473 764 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 HLA-DPA1P20036 260 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 DGKAP23743 735 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 STIP1P31948 543 aaKnown RBP11.05□□□□□ -0.64
LIG1-211ENST00000596457 GRK6P43250 576 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 RXRGP48443 463 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 SPINT3P49223 89 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 SRP54P61011 504 aaKnown RBP11.05□□□□□ -0.64
LIG1-211ENST00000596457 HNRNPKP61978 463 aaKnown RBP eCLIP11.05□□□□□ -0.64
LIG1-211ENST00000596457 PPARDQ03181 441 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 OASLQ15646 514 aaKnown RBP11.05□□□□□ -0.64
LIG1-211ENST00000596457 TRIP6Q15654 476 aaKnown RBP11.05□□□□□ -0.64
LIG1-211ENST00000596457 CDKN3Q16667 212 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 INAVAQ3KP66 663 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 HS1BP3Q53T59 392 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 MACC1Q6ZN28 852 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 GLT6D1Q7Z4J2 308 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 PIP4P1Q86T03 277 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 HEATR4Q86WZ0 1026 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 PHACTR4Q8IZ21 702 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 NRSN1Q8IZ57 195 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 PDCD7Q8N8D1 485 aaKnown RBP11.05□□□□□ -0.64
LIG1-211ENST00000596457 ATL2Q8NHH9 583 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 SAP25Q8TEE9 199 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 COG1Q8WTW3 980 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 LYSMD1Q96S90 227 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 SPATA16Q9BXB7 569 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 SLC13A1Q9BZW2 595 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 FAM83DQ9H4H8 585 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 WDR26Q9H7D7 661 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 MRPL40Q9NQ50 206 aaKnown RBP11.05□□□□□ -0.64
LIG1-211ENST00000596457 PHPT1Q9NRX4 125 aaPredicted RBP11.05□□□□□ -0.64
LIG1-211ENST00000596457 GPR27Q9NS67 375 aa11.05□□□□□ -0.64
LIG1-211ENST00000596457 APOBEC3BQ9UH17 382 aaKnown RBP11.05□□□□□ -0.64
LIG1-211ENST00000596457 PNMA8BQ9ULN7 279 aaPredicted RBP11.05□□□□□ -0.64
LIG1-211ENST00000596457 LRP4O75096 1905 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 MYLKQ15746 1914 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 TMEM202A6NGA9 273 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 E7EVH7 732 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 PSMD3O43242 534 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 PCDHGA12O60330 932 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 RASGRP1O95267 797 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 TRIM16O95361 564 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 LDOC1O95751 146 aaPredicted RBP11.04□□□□□ -0.64
LIG1-211ENST00000596457 EPOP01588 193 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 FGF1P05230 155 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 ZSCAN5DPP0CG00 497 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 TPH1P17752 444 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 POLD2P49005 469 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 KIAA1024LP59773 190 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 SIM1P81133 766 aaPredicted RBP11.04□□□□□ -0.64
LIG1-211ENST00000596457 TRIP13Q15645 432 aaPredicted RBP11.04□□□□□ -0.64
LIG1-211ENST00000596457 ALG11Q2TAA5 492 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 P3H1Q32P28 736 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 PRRT3Q5FWE3 981 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 MARK2Q7KZI7 788 aaKnown RBP11.04□□□□□ -0.64
LIG1-211ENST00000596457 TMC3Q7Z5M5 1100 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 TRIM74Q86UV6 250 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 SLC25A45Q8N413 288 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 RASGEF1CQ8N431 466 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 GLIS1Q8NBF1 620 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 GPR26Q8NDV2 337 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 OR56A4Q8NGH8 313 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 BTN2A2Q8WVV5 523 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 MAGOHBQ96A72 148 aaKnown RBP11.04□□□□□ -0.64
LIG1-211ENST00000596457 EID2BQ96D98 161 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 CNDP2Q96KP4 475 aaKnown RBP11.04□□□□□ -0.64
LIG1-211ENST00000596457 CAPZA3Q96KX2 299 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 PPP1R2P1Q96PQ5 205 aa11.04□□□□□ -0.64
LIG1-211ENST00000596457 WDR24Q96S15 920 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms