RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 LGR4Q9BXB1 951 aa14.98□□□□□ -0.01
UPF1-202ENST00000594243 KLQ9UEF7 1012 aa14.98□□□□□ -0.01
UPF1-202ENST00000594243 FTSJ1Q9UET6 329 aa14.98□□□□□ -0.01
UPF1-202ENST00000594243 APOBEC3BQ9UH17 382 aaKnown RBP14.98□□□□□ -0.01
UPF1-202ENST00000594243 KLF15Q9UIH9 416 aa14.98□□□□□ -0.01
UPF1-202ENST00000594243 DRG1Q9Y295 367 aaKnown RBP14.98□□□□□ -0.01
UPF1-202ENST00000594243 LRRK1Q38SD2 2015 aa14.97□□□□□ -0.01
UPF1-202ENST00000594243 SPAARA0A1B0GVQ0 90 aa14.97□□□□□ -0.01
UPF1-202ENST00000594243 TMEM202A6NGA9 273 aa14.97□□□□□ -0.01
UPF1-202ENST00000594243 AQP9O43315 295 aa14.97□□□□□ -0.01
UPF1-202ENST00000594243 AGTP01019 485 aa14.97□□□□□ -0.01
UPF1-202ENST00000594243 HMGCLP35914 325 aa14.97□□□□□ -0.01
UPF1-202ENST00000594243 CDK3Q00526 305 aa14.97□□□□□ -0.01
UPF1-202ENST00000594243 SNX1Q13596 522 aa14.97□□□□□ -0.01
UPF1-202ENST00000594243 SIX1Q15475 284 aaPredicted RBP14.97□□□□□ -0.01
UPF1-202ENST00000594243 ALG11Q2TAA5 492 aa14.97□□□□□ -0.01
UPF1-202ENST00000594243 N4BP2L1Q5TBK1 243 aaPredicted RBP14.97□□□□□ -0.01
UPF1-202ENST00000594243 ADAMTSL4Q6UY14 1074 aa14.97□□□□□ -0.01
UPF1-202ENST00000594243 RD3Q7Z3Z2 195 aa14.97□□□□□ -0.01
UPF1-202ENST00000594243 HID1Q8IV36 788 aa14.97□□□□□ -0.01
UPF1-202ENST00000594243 PELI3Q8N2H9 469 aa14.97□□□□□ -0.01
UPF1-202ENST00000594243 SDR16C5Q8N3Y7 309 aa14.97□□□□□ -0.01
UPF1-202ENST00000594243 RASGEF1CQ8N431 466 aa14.97□□□□□ -0.01
UPF1-202ENST00000594243 ZNF548Q8NEK5 533 aaPredicted RBP14.97□□□□□ -0.01
UPF1-202ENST00000594243 LMX1AQ8TE12 382 aa14.97□□□□□ -0.01
UPF1-202ENST00000594243 TSACCQ96A04 125 aaPredicted RBP14.97□□□□□ -0.01
UPF1-202ENST00000594243 CNDP2Q96KP4 475 aaKnown RBP14.97□□□□□ -0.01
UPF1-202ENST00000594243 NAP1L3Q99457 506 aaPredicted RBP14.97□□□□□ -0.01
UPF1-202ENST00000594243 FICDQ9BVA6 458 aa14.97□□□□□ -0.01
UPF1-202ENST00000594243 RIOK2Q9BVS4 552 aaKnown RBP14.97□□□□□ -0.01
UPF1-202ENST00000594243 UCKL1Q9NWZ5 548 aa14.97□□□□□ -0.01
UPF1-202ENST00000594243 NLGN3Q9NZ94 848 aa14.97□□□□□ -0.01
UPF1-202ENST00000594243 FEZ2Q9UHY8 353 aaPredicted RBP14.97□□□□□ -0.01
UPF1-202ENST00000594243 DGKBQ9Y6T7 804 aa14.97□□□□□ -0.01
UPF1-202ENST00000594243 TPP1O14773 563 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 METTL18O95568 372 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 IFNB1P01574 187 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 ATP1A1P05023 1023 aaKnown RBP14.96□□□□□ -0.01
UPF1-202ENST00000594243 ADRA1AP35348 466 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 CHRNA4P43681 627 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 ELOCQ15369 112 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 CACNA1EQ15878 2313 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 PRRT3Q5FWE3 981 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 HENMT1Q5T8I9 393 aaKnown RBP14.96□□□□□ -0.01
UPF1-202ENST00000594243 ZDHHC20Q5W0Z9 365 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 GLT6D1Q7Z4J2 308 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 KLHDC8BQ8IXV7 354 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 RBFAQ8N0V3 343 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 FSTL5Q8N475 847 aaPredicted RBP14.96□□□□□ -0.01
UPF1-202ENST00000594243 CCDC89Q8N998 374 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 OR4C6Q8NH72 309 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 BLOC1S5Q8TDH9 187 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 EID2BQ96D98 161 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 HIC2Q96JB3 615 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 WDR24Q96S15 920 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 TBL1YQ9BQ87 522 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 LRRC40Q9H9A6 602 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 ARNT2Q9HBZ2 717 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.96□□□□□ -0.01
UPF1-202ENST00000594243 MOSPD1Q9UJG1 213 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 PNMA8BQ9ULN7 279 aaPredicted RBP14.96□□□□□ -0.01
UPF1-202ENST00000594243 TTC7AQ9ULT0 858 aaPredicted RBP14.96□□□□□ -0.01
UPF1-202ENST00000594243 APOBEC2Q9Y235 224 aaKnown RBP14.96□□□□□ -0.01
UPF1-202ENST00000594243 SPO11Q9Y5K1 396 aa14.96□□□□□ -0.01
UPF1-202ENST00000594243 TP53BP1Q12888 1972 aaPredicted RBP14.96□□□□□ -0.01
UPF1-202ENST00000594243 TPRP12270 2363 aaKnown RBP14.95□□□□□ -0.02
UPF1-202ENST00000594243 USP27XA6NNY8 438 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 CES2O00748 559 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 AURKAO14965 403 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 FFAR2O15552 330 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 PPFIA2O75334 1257 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 TRIM16O95361 564 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 SOD1P00441 154 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 SLC4A1P02730 911 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 ADRB1P08588 477 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 FDFT1P37268 417 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 DCDC1P59894 354 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 KCTD11Q693B1 232 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 PDPK2PQ6A1A2 396 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 C4orf22Q6V702 233 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 GSTA5Q7RTV2 222 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 GPR26Q8NDV2 337 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 SCG3Q8WXD2 468 aaKnown RBP14.95□□□□□ -0.02
UPF1-202ENST00000594243 PLEKHG4BQ96PX9 1271 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 OSBPL9Q96SU4 736 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 AGAP2Q99490 1192 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 ZSCAN5AQ9BUG6 496 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 LRRC61Q9BV99 259 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 SPATA16Q9BXB7 569 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 TCEAL2Q9H3H9 227 aaPredicted RBP14.95□□□□□ -0.02
UPF1-202ENST00000594243 EVA1BQ9NVM1 165 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 PAK5Q9P286 719 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 NFKBIL1Q9UBC1 381 aaPredicted RBP14.95□□□□□ -0.02
UPF1-202ENST00000594243 PYCARDQ9ULZ3 195 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 DOLKQ9UPQ8 538 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 PKP3Q9Y446 797 aa14.95□□□□□ -0.02
UPF1-202ENST00000594243 LAMA1P25391 3075 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 PRSS38A1L453 326 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 C2orf81A6NN90 581 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 ERI2A8K979 691 aaKnown RBP14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms