RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 PARP6Q2NL67 630 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 ALG11Q2TAA5 492 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 HS1BP3Q53T59 392 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 HENMT1Q5T8I9 393 aaKnown RBP11.86□□□□□ -0.51
LIG3-213ENST00000590630 FAXCQ5TGI0 409 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 DRICH1Q6PGQ1 229 aaPredicted RBP11.86□□□□□ -0.51
LIG3-213ENST00000590630 ENPP7Q6UWV6 458 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 ADAMTSL4Q6UY14 1074 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 RANBP10Q6VN20 620 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 RFLNAQ6ZTI6 216 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 TMC3Q7Z5M5 1100 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 KLHDC8BQ8IXV7 354 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 PELI3Q8N2H9 469 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 EID2Q8N6I1 236 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 OR56A4Q8NGH8 313 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 OR4C6Q8NH72 309 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 C1orf54Q8WWF1 131 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 SCAMP4Q969E2 229 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 PBKQ96KB5 322 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 GPR63Q9BZJ6 419 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 FAM83DQ9H4H8 585 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 HOMER3Q9NSC5 361 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 UCKL1Q9NWZ5 548 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 NLGN3Q9NZ94 848 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 NFKBIL1Q9UBC1 381 aaPredicted RBP11.86□□□□□ -0.51
LIG3-213ENST00000590630 SPASTQ9UBP0 616 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 CD84Q9UIB8 345 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 PNMA8BQ9ULN7 279 aaPredicted RBP11.86□□□□□ -0.51
LIG3-213ENST00000590630 SHOC2Q9UQ13 582 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 ZNF148Q9UQR1 794 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 DGKBQ9Y6T7 804 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 ARHGEF17Q96PE2 2063 aaPredicted RBP11.85□□□□□ -0.51
LIG3-213ENST00000590630 SPAARA0A1B0GVQ0 90 aa11.85□□□□□ -0.51
LIG3-213ENST00000590630 TMEM202A6NGA9 273 aa11.85□□□□□ -0.51
LIG3-213ENST00000590630 AQP9O43315 295 aa11.85□□□□□ -0.51
LIG3-213ENST00000590630 ADRB1P08588 477 aa11.85□□□□□ -0.51
LIG3-213ENST00000590630 ADRA1AP35348 466 aa11.85□□□□□ -0.51
LIG3-213ENST00000590630 ACTN2P35609 894 aa11.85□□□□□ -0.51
LIG3-213ENST00000590630 CHRNA4P43681 627 aa11.85□□□□□ -0.51
LIG3-213ENST00000590630 LONRF2Q1L5Z9 754 aa11.85□□□□□ -0.51
LIG3-213ENST00000590630 PRRT3Q5FWE3 981 aa11.85□□□□□ -0.51
LIG3-213ENST00000590630 N4BP2L1Q5TBK1 243 aaPredicted RBP11.85□□□□□ -0.51
LIG3-213ENST00000590630 HID1Q8IV36 788 aa11.85□□□□□ -0.51
LIG3-213ENST00000590630 RBFAQ8N0V3 343 aa11.85□□□□□ -0.51
LIG3-213ENST00000590630 SLC35F6Q8N357 371 aa11.85□□□□□ -0.51
LIG3-213ENST00000590630 SDR16C5Q8N3Y7 309 aa11.85□□□□□ -0.51
LIG3-213ENST00000590630 FSTL5Q8N475 847 aaPredicted RBP11.85□□□□□ -0.51
LIG3-213ENST00000590630 SLC25A41Q8N5S1 370 aa11.85□□□□□ -0.51
LIG3-213ENST00000590630 EID2BQ96D98 161 aa11.85□□□□□ -0.51
LIG3-213ENST00000590630 PDXPQ96GD0 296 aa11.85□□□□□ -0.51
LIG3-213ENST00000590630 NAP1L3Q99457 506 aaPredicted RBP11.85□□□□□ -0.51
LIG3-213ENST00000590630 LRRC61Q9BV99 259 aa11.85□□□□□ -0.51
LIG3-213ENST00000590630 FICDQ9BVA6 458 aa11.85□□□□□ -0.51
LIG3-213ENST00000590630 DUSP23Q9BVJ7 150 aa11.85□□□□□ -0.51
LIG3-213ENST00000590630 RIOK2Q9BVS4 552 aaKnown RBP11.85□□□□□ -0.51
LIG3-213ENST00000590630 LGR4Q9BXB1 951 aa11.85□□□□□ -0.51
LIG3-213ENST00000590630 FGF22Q9HCT0 170 aa11.85□□□□□ -0.51
LIG3-213ENST00000590630 FEZ2Q9UHY8 353 aaPredicted RBP11.85□□□□□ -0.51
LIG3-213ENST00000590630 TTC7AQ9ULT0 858 aaPredicted RBP11.85□□□□□ -0.51
LIG3-213ENST00000590630 SPO11Q9Y5K1 396 aa11.85□□□□□ -0.51
LIG3-213ENST00000590630 MYLKQ15746 1914 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 PRSS38A1L453 326 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 USP27XA6NNY8 438 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 LMO7DNF2Z398 122 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 TPP1O14773 563 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 FFAR2O15552 330 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 PSMD3O43242 534 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 PPFIA2O75334 1257 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 METTL18O95568 372 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 LDOC1O95751 146 aaPredicted RBP11.84□□□□□ -0.51
LIG3-213ENST00000590630 AGTP01019 485 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 TNFP01375 233 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 IFNB1P01574 187 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 SLC4A1P02730 911 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 ATP1A1P05023 1023 aaKnown RBP11.84□□□□□ -0.51
LIG3-213ENST00000590630 CTSEP14091 401 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 SNX1Q13596 522 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 ELOCQ15369 112 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 ZDHHC20Q5W0Z9 365 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 KCTD11Q693B1 232 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 PDPK2PQ6A1A2 396 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 GLT6D1Q7Z4J2 308 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 RASGEF1CQ8N431 466 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 CCDC89Q8N998 374 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 BLOC1S5Q8TDH9 187 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 LMX1AQ8TE12 382 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 OR1E3Q8WZA6 343 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 TSACCQ96A04 125 aaPredicted RBP11.84□□□□□ -0.51
LIG3-213ENST00000590630 HIC2Q96JB3 615 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 CNDP2Q96KP4 475 aaKnown RBP11.84□□□□□ -0.51
LIG3-213ENST00000590630 PLEKHG4BQ96PX9 1271 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 WDR24Q96S15 920 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 TBL1YQ9BQ87 522 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 ZSCAN5AQ9BUG6 496 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 FRMD8Q9BZ67 464 aaPredicted RBP11.84□□□□□ -0.51
LIG3-213ENST00000590630 TCEAL2Q9H3H9 227 aaPredicted RBP11.84□□□□□ -0.51
LIG3-213ENST00000590630 LRRC40Q9H9A6 602 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 ARNT2Q9HBZ2 717 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 NCKIPSDQ9NZQ3 722 aa11.84□□□□□ -0.51
LIG3-213ENST00000590630 PYCARDQ9ULZ3 195 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms