RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 FOXC1Q12948 553 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 DLG1Q12959 904 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 PTK2BQ14289 1009 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 LRRC36Q1X8D7 754 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 MGAT5BQ3V5L5 792 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 PIGGQ5H8A4 983 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 FAM171A1Q5VUB5 890 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 RAP1GAP2Q684P5 730 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 LILRB2Q8N423 598 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 SPATA6LQ8N4H0 392 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 PCYOX1LQ8NBM8 494 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 GPR150Q8NGU9 434 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 UCMAQ8WVF2 138 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 PLD4Q96BZ4 506 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 RCN3Q96D15 328 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 ZNF419Q96HQ0 510 aaPredicted RBP7.4□□□□□ -1.22
ZNF540-206ENST00000589117 CEP295NLQ96MC4 621 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 NDNQ99608 321 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 SEMA3CQ99985 751 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 EFHD1Q9BUP0 239 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 SLC25A23Q9BV35 468 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 NACA2Q9H009 215 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 MAGEH1Q9H213 219 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 NOL6Q9H6R4 1146 aaKnown RBP7.4□□□□□ -1.22
ZNF540-206ENST00000589117 ADA2Q9NZK5 511 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 GABRQQ9UN88 632 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 PCDHB7Q9Y5E2 793 aa7.4□□□□□ -1.22
ZNF540-206ENST00000589117 ZNF638Q14966 1978 aaKnown RBP7.4□□□□□ -1.22
ZNF540-206ENST00000589117 TDRD15B5MCY1 1934 aaKnown RBP7.4□□□□□ -1.23
ZNF540-206ENST00000589117 EIF4E1BA6NMX2 242 aaKnown RBP7.4□□□□□ -1.23
ZNF540-206ENST00000589117 C2orf81A6NN90 581 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 TRIM38O00635 465 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 SDHDO14521 159 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 CD3EAPO15446 510 aaKnown RBP7.4□□□□□ -1.23
ZNF540-206ENST00000589117 PRAMEF11O60813 436 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 SUPT7LO94864 414 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 SNRPB2P08579 225 aaKnown RBP7.4□□□□□ -1.23
ZNF540-206ENST00000589117 HNRNPLP14866 589 aaKnown RBP eCLIP7.4□□□□□ -1.23
ZNF540-206ENST00000589117 VCLP18206 1134 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 OGNP20774 298 aaKnown RBP7.4□□□□□ -1.23
ZNF540-206ENST00000589117 PGFP49763 221 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 ACLYP53396 1101 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 HERVK_113P63132 956 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 NFKB2Q00653 900 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 PRKCZQ05513 592 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 TAF10Q12962 218 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 GPR17Q13304 367 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 GEN1Q17RS7 908 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 ZNF423Q2M1K9 1284 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 TRIM71Q2Q1W2 868 aaKnown RBP7.4□□□□□ -1.23
ZNF540-206ENST00000589117 ALFQ53S48 1182 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 CCSAPQ6IQ19 270 aaPredicted RBP7.4□□□□□ -1.23
ZNF540-206ENST00000589117 CHSY3Q70JA7 882 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 PRICKLE2Q7Z3G6 844 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 CUZD1Q86UP6 607 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 MFSD6LQ8IWD5 586 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 ZNF683Q8IZ20 524 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 CLYBLQ8N0X4 340 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 ADCY4Q8NFM4 1077 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 OR13J1Q8NGT2 312 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 PHF21BQ96EK2 531 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 L3HYPDHQ96EM0 354 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 TMA16Q96EY4 203 aaKnown RBP7.4□□□□□ -1.23
ZNF540-206ENST00000589117 KLHL5Q96PQ7 755 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 ZIC5Q96T25 663 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 TCF12Q99081 682 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 ERVK-6Q9BXR3 956 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 YIPF3Q9GZM5 350 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 ZNF385DQ9H6B1 395 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 ELAC1Q9H777 363 aaKnown RBP7.4□□□□□ -1.23
ZNF540-206ENST00000589117 PCDH12Q9NPG4 1184 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 INTS10Q9NVR2 710 aaKnown RBP7.4□□□□□ -1.23
ZNF540-206ENST00000589117 NDUFA13Q9P0J0 144 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 ADAMTS6Q9UKP5 1117 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 DTNAQ9Y4J8 743 aa7.4□□□□□ -1.23
ZNF540-206ENST00000589117 CCDC189A1A4V9 331 aa7.39□□□□□ -1.23
ZNF540-206ENST00000589117 SYCE1LA8MT33 242 aa7.39□□□□□ -1.23
ZNF540-206ENST00000589117 VPS4BO75351 444 aa7.39□□□□□ -1.23
ZNF540-206ENST00000589117 SKAP2O75563 359 aaPredicted RBP7.39□□□□□ -1.23
ZNF540-206ENST00000589117 RPP40O75818 363 aaKnown RBP7.39□□□□□ -1.23
ZNF540-206ENST00000589117 BCAS2O75934 225 aaPredicted RBP7.39□□□□□ -1.23
ZNF540-206ENST00000589117 CNTN5O94779 1100 aa7.39□□□□□ -1.23
ZNF540-206ENST00000589117 LINGO3P0C6S8 592 aa7.39□□□□□ -1.23
ZNF540-206ENST00000589117 UBTFL6P0CB48 400 aaPredicted RBP7.39□□□□□ -1.23
ZNF540-206ENST00000589117 ATP5C1P36542 298 aaKnown RBP7.39□□□□□ -1.23
ZNF540-206ENST00000589117 ACADVLP49748 655 aa7.39□□□□□ -1.23
ZNF540-206ENST00000589117 ATP4BP51164 291 aa7.39□□□□□ -1.23
ZNF540-206ENST00000589117 INHBCP55103 352 aa7.39□□□□□ -1.23
ZNF540-206ENST00000589117 ARPP19P56211 112 aa7.39□□□□□ -1.23
ZNF540-206ENST00000589117 ACVR1Q04771 509 aa7.39□□□□□ -1.23
ZNF540-206ENST00000589117 SULT2A1Q06520 285 aa7.39□□□□□ -1.23
ZNF540-206ENST00000589117 NSUN2Q08J23 767 aaKnown RBP eCLIP7.39□□□□□ -1.23
ZNF540-206ENST00000589117 TRAP1Q12931 704 aaKnown RBP7.39□□□□□ -1.23
ZNF540-206ENST00000589117 PEX6Q13608 980 aa7.39□□□□□ -1.23
ZNF540-206ENST00000589117 FASTKQ14296 549 aaKnown RBP7.39□□□□□ -1.23
ZNF540-206ENST00000589117 CLLU1OSQ5K130 101 aa7.39□□□□□ -1.23
ZNF540-206ENST00000589117 RBM20Q5T481 1227 aaKnown RBP7.39□□□□□ -1.23
ZNF540-206ENST00000589117 RASIP1Q5U651 963 aa7.39□□□□□ -1.23
ZNF540-206ENST00000589117 SDHAF4Q5VUM1 108 aa7.39□□□□□ -1.23
ZNF540-206ENST00000589117 TMEM198Q66K66 360 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms