RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 RGSL1A5PLK6 1076 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 B4DGG1 531 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 TMX2-CTNND1H3BSU7 103 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 ZW10O43264 779 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 BRINP1O60477 761 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 CEACAM5P06731 702 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 MMP2P08253 660 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 CETN2P41208 172 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 BIRC2Q13490 618 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 QPCTQ16769 361 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 ISXQ2M1V0 245 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 TEX44Q53QW1 395 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 CCDC181Q5TID7 509 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 OGFOD3Q6PK18 319 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 DOK6Q6PKX4 331 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 NYAP1Q6ZVC0 841 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 KDELC2Q7Z4H8 507 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 TXLNBQ8N3L3 684 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 GPR156Q8NFN8 814 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 ANP32BQ92688 251 aaKnown RBP12.33□□□□□ -0.44
SS18-225ENST00000585121 FGF11Q92914 225 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 SCAMP4Q969E2 229 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 CCDC74AQ96AQ1 378 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 IMP4Q96G21 291 aaKnown RBP12.33□□□□□ -0.44
SS18-225ENST00000585121 HIC2Q96JB3 615 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 DCBLD2Q96PD2 775 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 GFM1Q96RP9 751 aaKnown RBP12.33□□□□□ -0.44
SS18-225ENST00000585121 FERMT1Q9BQL6 677 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 RIOK2Q9BVS4 552 aaKnown RBP12.33□□□□□ -0.44
SS18-225ENST00000585121 CEP41Q9BYV8 373 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 LHX6Q9UPM6 363 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 GPSM3Q9Y4H4 160 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 FAM208BQ5VWN6 2430 aa12.33□□□□□ -0.44
SS18-225ENST00000585121 A0A0U1RQS6 177 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 SOWAHDA6NJG2 315 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 ASMTLO95671 621 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 IVLP07476 585 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 GLB1P16278 677 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 LSSP48449 732 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 GABREP78334 506 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 CDK18Q07002 472 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 IHHQ14623 411 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 LLGL1Q15334 1064 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 SLC14A2Q15849 920 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 TAZQ16635 292 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 C14orf28Q4W4Y0 310 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 KCTD16Q68DU8 428 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 C19orf48Q6RUI8 117 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 RFLNAQ6ZTI6 216 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 GPBAR1Q8TDU6 330 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 HNRNPLLQ8WVV9 542 aaKnown RBP12.32□□□□□ -0.44
SS18-225ENST00000585121 ZNF578Q96N58 590 aaPredicted RBP12.32□□□□□ -0.44
SS18-225ENST00000585121 SMIM14Q96QK8 99 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 SRPK1Q96SB4 655 aaKnown RBP12.32□□□□□ -0.44
SS18-225ENST00000585121 CDH19Q9H159 772 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 GOLPH3Q9H4A6 298 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 FAM83DQ9H4H8 585 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 POLR1BQ9H9Y6 1135 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 ZFYVE1Q9HBF4 777 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 GLOD4Q9HC38 313 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 RAD18Q9NS91 495 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 SLC17A4Q9Y2C5 497 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 LRRK1Q38SD2 2015 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 hCG_1818297A0A087WSY0 165 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 GOLGA6L6A8MZA4 724 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 HACD1B0YJ81 288 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 MPOP05164 745 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 PNLIPP16233 465 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 PTPN3P26045 913 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 RBMS1P29558 406 aaKnown RBP12.32□□□□□ -0.44
SS18-225ENST00000585121 POLD2P49005 469 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 SPINT3P49223 89 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 COPS2P61201 443 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 GALNT3Q14435 633 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 PRKD1Q15139 912 aaPredicted RBP12.32□□□□□ -0.44
SS18-225ENST00000585121 PPP2R5EQ16537 467 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 PCSK7Q16549 785 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 TBC1D25Q3MII6 688 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 B4GALNT4Q76KP1 1039 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 KIAA1328Q86T90 577 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 GALNT13Q8IUC8 556 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 Q8N9G6 341 aaPredicted RBP12.32□□□□□ -0.44
SS18-225ENST00000585121 CCL4L1Q8NHW4 92 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 ZDHHC1Q8WTX9 485 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 TEKT5Q96M29 485 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 VAT1Q99536 393 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 GPR63Q9BZJ6 419 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 STRADBQ9C0K7 418 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 TAAR2Q9P1P5 351 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 KLHL8Q9P2G9 620 aaPredicted RBP12.32□□□□□ -0.44
SS18-225ENST00000585121 LRIT1Q9P2V4 623 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 SAE1Q9UBE0 346 aaPredicted RBP12.32□□□□□ -0.44
SS18-225ENST00000585121 APPL1Q9UKG1 709 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 TFR2Q9UP52 801 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 TMEM98Q9Y2Y6 226 aa12.32□□□□□ -0.44
SS18-225ENST00000585121 ASXL3Q9C0F0 2248 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 ZFHX4Q86UP3 3567 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 A0A087WV48 116 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 BTNL10A8MVZ5 291 aa12.31□□□□□ -0.44
SS18-225ENST00000585121 NTN3O00634 580 aaPredicted RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms