RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 APOC2P02655 101 aa23.82■■□□□ 1.4
SHMT1-206ENST00000579558 MAPK15Q8TD08 544 aa23.82■■□□□ 1.4
SHMT1-206ENST00000579558 CCHCR1Q8TD31 782 aa23.82■■□□□ 1.4
SHMT1-206ENST00000579558 FRMD8Q9BZ67 464 aaPredicted RBP23.82■■□□□ 1.4
SHMT1-206ENST00000579558 OSBPL8Q9BZF1 889 aa23.82■■□□□ 1.4
SHMT1-206ENST00000579558 TMEM168Q9H0V1 697 aa23.82■■□□□ 1.4
SHMT1-206ENST00000579558 ABCG4Q9H172 646 aa23.82■■□□□ 1.4
SHMT1-206ENST00000579558 SUDS3Q9H7L9 328 aaPredicted RBP23.82■■□□□ 1.4
SHMT1-206ENST00000579558 KLHL8Q9P2G9 620 aaPredicted RBP23.82■■□□□ 1.4
SHMT1-206ENST00000579558 GULP1Q9UBP9 304 aa23.82■■□□□ 1.4
SHMT1-206ENST00000579558 GPR34Q9UPC5 381 aa23.82■■□□□ 1.4
SHMT1-206ENST00000579558 MYLKQ15746 1914 aa23.82■■□□□ 1.4
SHMT1-206ENST00000579558 A0A0U1RQJ8 604 aa23.81■■□□□ 1.4
SHMT1-206ENST00000579558 MT-CO3P00414 261 aa23.81■■□□□ 1.4
SHMT1-206ENST00000579558 SOD1P00441 154 aa23.81■■□□□ 1.4
SHMT1-206ENST00000579558 CEACAM5P06731 702 aa23.81■■□□□ 1.4
SHMT1-206ENST00000579558 CETN2P41208 172 aa23.81■■□□□ 1.4
SHMT1-206ENST00000579558 CDK18Q07002 472 aa23.81■■□□□ 1.4
SHMT1-206ENST00000579558 ADAMTSL4Q6UY14 1074 aa23.81■■□□□ 1.4
SHMT1-206ENST00000579558 TAF8Q7Z7C8 310 aa23.81■■□□□ 1.4
SHMT1-206ENST00000579558 NLRP8Q86W28 1048 aa23.81■■□□□ 1.4
SHMT1-206ENST00000579558 RAVER1Q8IY67 606 aaKnown RBP23.81■■□□□ 1.4
SHMT1-206ENST00000579558 CACTIN-AS1Q8N1I8 211 aa23.81■■□□□ 1.4
SHMT1-206ENST00000579558 ARL10Q8N8L6 244 aa23.81■■□□□ 1.4
SHMT1-206ENST00000579558 KYQ8NBH2 561 aa23.81■■□□□ 1.4
SHMT1-206ENST00000579558 MDM1Q8TC05 714 aa23.81■■□□□ 1.4
SHMT1-206ENST00000579558 HTR3CQ8WXA8 447 aa23.81■■□□□ 1.4
SHMT1-206ENST00000579558 NAT6Q93015 286 aa23.81■■□□□ 1.4
SHMT1-206ENST00000579558 HERPUD2Q9BSE4 406 aa23.81■■□□□ 1.4
SHMT1-206ENST00000579558 RIOK2Q9BVS4 552 aaKnown RBP23.81■■□□□ 1.4
SHMT1-206ENST00000579558 CARS2Q9HA77 564 aaKnown RBP23.81■■□□□ 1.4
SHMT1-206ENST00000579558 UBP1Q9NZI7 540 aa23.81■■□□□ 1.4
SHMT1-206ENST00000579558 PKD2L2Q9NZM6 624 aa23.81■■□□□ 1.4
SHMT1-206ENST00000579558 AMFRQ9UKV5 643 aa23.81■■□□□ 1.4
SHMT1-206ENST00000579558 PADI4Q9UM07 663 aa23.81■■□□□ 1.4
SHMT1-206ENST00000579558 EFR3BQ9Y2G0 817 aa23.81■■□□□ 1.4
SHMT1-206ENST00000579558 KNTC1P50748 2209 aa23.81■■□□□ 1.4
SHMT1-206ENST00000579558 H7C0C1 242 aa23.8■■□□□ 1.4
SHMT1-206ENST00000579558 PMPCBO75439 489 aa23.8■■□□□ 1.4
SHMT1-206ENST00000579558 CAPNS1P04632 268 aa23.8■■□□□ 1.4
SHMT1-206ENST00000579558 PYGLP06737 847 aa23.8■■□□□ 1.4
SHMT1-206ENST00000579558 NFKB1P19838 968 aa23.8■■□□□ 1.4
SHMT1-206ENST00000579558 CD68P34810 354 aaPredicted RBP23.8■■□□□ 1.4
SHMT1-206ENST00000579558 PTPN7P35236 360 aa23.8■■□□□ 1.4
SHMT1-206ENST00000579558 ATP5OP48047 213 aa23.8■■□□□ 1.4
SHMT1-206ENST00000579558 GSDMDP57764 484 aa23.8■■□□□ 1.4
SHMT1-206ENST00000579558 XRCC4Q13426 336 aa23.8■■□□□ 1.4
SHMT1-206ENST00000579558 NOMO1Q15155 1222 aa23.8■■□□□ 1.4
SHMT1-206ENST00000579558 DOK6Q6PKX4 331 aa23.8■■□□□ 1.4
SHMT1-206ENST00000579558 LYSMD3Q7Z3D4 306 aa23.8■■□□□ 1.4
SHMT1-206ENST00000579558 PEX26Q7Z412 305 aa23.8■■□□□ 1.4
SHMT1-206ENST00000579558 SYCE1Q8N0S2 351 aa23.8■■□□□ 1.4
SHMT1-206ENST00000579558 DCBLD1Q8N8Z6 715 aa23.8■■□□□ 1.4
SHMT1-206ENST00000579558 ALG3Q92685 438 aa23.8■■□□□ 1.4
SHMT1-206ENST00000579558 AGAP2Q99490 1192 aa23.8■■□□□ 1.4
SHMT1-206ENST00000579558 VAT1Q99536 393 aa23.8■■□□□ 1.4
SHMT1-206ENST00000579558 NDST3O95803 873 aa23.79■■□□□ 1.4
SHMT1-206ENST00000579558 PIRTP0C851 137 aa23.79■■□□□ 1.4
SHMT1-206ENST00000579558 SPINT3P49223 89 aa23.79■■□□□ 1.4
SHMT1-206ENST00000579558 PERM1Q5SV97 790 aa23.79■■□□□ 1.4
SHMT1-206ENST00000579558 CCDC70Q6NSX1 233 aa23.79■■□□□ 1.4
SHMT1-206ENST00000579558 PID1Q7Z2X4 250 aa23.79■■□□□ 1.4
SHMT1-206ENST00000579558 ZNF567Q8N184 647 aa23.79■■□□□ 1.4
SHMT1-206ENST00000579558 CCL4L1Q8NHW4 92 aa23.79■■□□□ 1.4
SHMT1-206ENST00000579558 FAM153AQ9UHL3 310 aa23.79■■□□□ 1.4
SHMT1-206ENST00000579558 SUFUQ9UMX1 484 aa23.79■■□□□ 1.4
SHMT1-206ENST00000579558 SLC17A4Q9Y2C5 497 aa23.79■■□□□ 1.4
SHMT1-206ENST00000579558 CHD6Q8TD26 2715 aa23.78■■□□□ 1.4
SHMT1-206ENST00000579558 F5H423 210 aaPredicted RBP23.78■■□□□ 1.4
SHMT1-206ENST00000579558 GNPDA1P46926 289 aa23.78■■□□□ 1.4
SHMT1-206ENST00000579558 POLD2P49005 469 aa23.78■■□□□ 1.4
SHMT1-206ENST00000579558 OTUD4Q01804 1114 aaKnown RBP23.78■■□□□ 1.4
SHMT1-206ENST00000579558 CYP4F3Q08477 520 aa23.78■■□□□ 1.4
SHMT1-206ENST00000579558 CDCP2Q5VXM1 449 aa23.78■■□□□ 1.4
SHMT1-206ENST00000579558 AADACL2Q6P093 401 aa23.78■■□□□ 1.4
SHMT1-206ENST00000579558 TRIM74Q86UV6 250 aa23.78■■□□□ 1.4
SHMT1-206ENST00000579558 PROSER1Q86XN7 944 aa23.78■■□□□ 1.4
SHMT1-206ENST00000579558 UBL4BQ8N7F7 174 aa23.78■■□□□ 1.4
SHMT1-206ENST00000579558 FAM46DQ8NEK8 389 aa23.78■■□□□ 1.4
SHMT1-206ENST00000579558 ACTL9Q8TC94 416 aa23.78■■□□□ 1.4
SHMT1-206ENST00000579558 NXPE2Q96DL1 559 aa23.78■■□□□ 1.4
SHMT1-206ENST00000579558 HIC2Q96JB3 615 aa23.78■■□□□ 1.4
SHMT1-206ENST00000579558 WDR24Q96S15 920 aa23.78■■□□□ 1.4
SHMT1-206ENST00000579558 FAM83DQ9H4H8 585 aa23.78■■□□□ 1.4
SHMT1-206ENST00000579558 C10orf88Q9H8K7 445 aa23.78■■□□□ 1.4
SHMT1-206ENST00000579558 ZFYVE1Q9HBF4 777 aa23.78■■□□□ 1.4
SHMT1-206ENST00000579558 MAGEE1Q9HCI5 957 aa23.78■■□□□ 1.4
SHMT1-206ENST00000579558 SHOC2Q9UQ13 582 aa23.78■■□□□ 1.4
SHMT1-206ENST00000579558 ZNF711Q9Y462 761 aa23.78■■□□□ 1.4
SHMT1-206ENST00000579558 ASXL3Q9C0F0 2248 aa23.78■■□□□ 1.4
SHMT1-206ENST00000579558 RGSL1A5PLK6 1076 aa23.77■■□□□ 1.4
SHMT1-206ENST00000579558 INPP4BO15327 924 aa23.77■■□□□ 1.4
SHMT1-206ENST00000579558 FTCDO95954 541 aa23.77■■□□□ 1.4
SHMT1-206ENST00000579558 SLC4A1P02730 911 aa23.77■■□□□ 1.4
SHMT1-206ENST00000579558 FUCA1P04066 466 aa23.77■■□□□ 1.4
SHMT1-206ENST00000579558 IVLP07476 585 aa23.77■■□□□ 1.4
SHMT1-206ENST00000579558 PYGMP11217 842 aa23.77■■□□□ 1.4
SHMT1-206ENST00000579558 RBL1P28749 1068 aa23.77■■□□□ 1.4
SHMT1-206ENST00000579558 PTCD2Q8WV60 388 aaKnown RBP23.77■■□□□ 1.4
SHMT1-206ENST00000579558 DEPDC7Q96QD5 511 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms