RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 LYSMD3Q7Z3D4 306 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 RASGRP3Q8IV61 690 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 TP53INP2Q8IXH6 220 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 FMR1NBQ8N0W7 255 aaPredicted RBP16.11■□□□□ 0.17
CLK3-223ENST00000568488 PYROXD2Q8N2H3 581 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 MSANTD4Q8NCY6 345 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 MOCOSQ96EN8 888 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 COQ10AQ96MF6 247 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 OR2M4Q96R27 311 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 SLAMF7Q9NQ25 335 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 B4GALT6Q9UBX8 382 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 MAN1B1Q9UKM7 699 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 TMEM98Q9Y2Y6 226 aa16.11■□□□□ 0.17
CLK3-223ENST00000568488 SHANK1Q9Y566 2161 aa16.1■□□□□ 0.17
CLK3-223ENST00000568488 PPP1R3GB7ZBB8 358 aa16.1■□□□□ 0.17
CLK3-223ENST00000568488 CREB3O43889 395 aa16.1■□□□□ 0.17
CLK3-223ENST00000568488 KIAA0754O94854 1291 aa16.1■□□□□ 0.17
CLK3-223ENST00000568488 IVLP07476 585 aa16.1■□□□□ 0.17
CLK3-223ENST00000568488 PON1P27169 355 aa16.1■□□□□ 0.17
CLK3-223ENST00000568488 HHEXQ03014 270 aa16.1■□□□□ 0.17
CLK3-223ENST00000568488 CHAF1BQ13112 559 aa16.1■□□□□ 0.17
CLK3-223ENST00000568488 HSCBQ8IWL3 235 aa16.1■□□□□ 0.17
CLK3-223ENST00000568488 SFRP1Q8N474 314 aa16.1■□□□□ 0.17
CLK3-223ENST00000568488 TSEN2Q8NCE0 465 aaKnown RBP16.1■□□□□ 0.17
CLK3-223ENST00000568488 CPA5Q8WXQ8 436 aa16.1■□□□□ 0.17
CLK3-223ENST00000568488 C5orf34Q96MH7 638 aa16.1■□□□□ 0.17
CLK3-223ENST00000568488 MFRPQ9BY79 579 aa16.1■□□□□ 0.17
CLK3-223ENST00000568488 STN1Q9H668 368 aaKnown RBP16.1■□□□□ 0.17
CLK3-223ENST00000568488 HOOK1Q9UJC3 728 aaKnown RBP16.1■□□□□ 0.17
CLK3-223ENST00000568488 SLC17A4Q9Y2C5 497 aa16.1■□□□□ 0.17
CLK3-223ENST00000568488 EML2O95834 649 aa16.09■□□□□ 0.17
CLK3-223ENST00000568488 ETV3P41162 512 aa16.09■□□□□ 0.17
CLK3-223ENST00000568488 DNASE1L3Q13609 305 aa16.09■□□□□ 0.17
CLK3-223ENST00000568488 NAA30Q147X3 362 aaPredicted RBP16.09■□□□□ 0.17
CLK3-223ENST00000568488 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.09■□□□□ 0.17
CLK3-223ENST00000568488 ARCQ7LC44 396 aa16.09■□□□□ 0.17
CLK3-223ENST00000568488 GPT2Q8TD30 523 aa16.09■□□□□ 0.17
CLK3-223ENST00000568488 SNX21Q969T3 373 aa16.09■□□□□ 0.17
CLK3-223ENST00000568488 ECHDC3Q96DC8 303 aa16.09■□□□□ 0.17
CLK3-223ENST00000568488 OR6C1Q96RD1 312 aa16.09■□□□□ 0.17
CLK3-223ENST00000568488 LNPEPQ9UIQ6 1025 aa16.09■□□□□ 0.17
CLK3-223ENST00000568488 POLQO75417 2590 aa16.09■□□□□ 0.17
CLK3-223ENST00000568488 PALMO75781 387 aa16.08■□□□□ 0.16
CLK3-223ENST00000568488 NDUFA10O95299 355 aa16.08■□□□□ 0.16
CLK3-223ENST00000568488 CYP11B1P15538 503 aa16.08■□□□□ 0.16
CLK3-223ENST00000568488 GPR1P46091 355 aa16.08■□□□□ 0.16
CLK3-223ENST00000568488 CSNK1DP48730 415 aa16.08■□□□□ 0.16
CLK3-223ENST00000568488 SEPHS1P49903 392 aa16.08■□□□□ 0.16
CLK3-223ENST00000568488 CNGA3Q16281 694 aa16.08■□□□□ 0.16
CLK3-223ENST00000568488 NAA35Q5VZE5 725 aa16.08■□□□□ 0.16
CLK3-223ENST00000568488 CPZQ66K79 652 aa16.08■□□□□ 0.16
CLK3-223ENST00000568488 SLFN11Q7Z7L1 901 aa16.08■□□□□ 0.16
CLK3-223ENST00000568488 FAM71AQ8IYT1 594 aa16.08■□□□□ 0.16
CLK3-223ENST00000568488 FNIP1Q8TF40 1166 aa16.08■□□□□ 0.16
CLK3-223ENST00000568488 FAM172AQ8WUF8 416 aa16.08■□□□□ 0.16
CLK3-223ENST00000568488 SH3KBP1Q96B97 665 aa16.08■□□□□ 0.16
CLK3-223ENST00000568488 TBC1D10AQ9BXI6 508 aa16.08■□□□□ 0.16
CLK3-223ENST00000568488 CATSPERBQ9H7T0 1116 aa16.08■□□□□ 0.16
CLK3-223ENST00000568488 PDFQ9HBH1 243 aa16.08■□□□□ 0.16
CLK3-223ENST00000568488 ACSS2Q9NR19 701 aa16.08■□□□□ 0.16
CLK3-223ENST00000568488 SIDT1Q9NXL6 827 aaKnown RBP16.08■□□□□ 0.16
CLK3-223ENST00000568488 KCTD5Q9NXV2 234 aa16.08■□□□□ 0.16
CLK3-223ENST00000568488 PADI1Q9ULC6 663 aa16.08■□□□□ 0.16
CLK3-223ENST00000568488 SLC5A6Q9Y289 635 aa16.08■□□□□ 0.16
CLK3-223ENST00000568488 HIVEP3Q5T1R4 2406 aa16.07■□□□□ 0.16
CLK3-223ENST00000568488 ARGFXA6NJG6 315 aa16.07■□□□□ 0.16
CLK3-223ENST00000568488 PRAMEF11O60813 436 aa16.07■□□□□ 0.16
CLK3-223ENST00000568488 LRCH4O75427 683 aa16.07■□□□□ 0.16
CLK3-223ENST00000568488 FGFR1OPO95684 399 aaKnown RBP16.07■□□□□ 0.16
CLK3-223ENST00000568488 SCNN1BP51168 640 aa16.07■□□□□ 0.16
CLK3-223ENST00000568488 HDAC4P56524 1084 aa16.07■□□□□ 0.16
CLK3-223ENST00000568488 SH3BP2P78314 561 aa16.07■□□□□ 0.16
CLK3-223ENST00000568488 JMJD6Q6NYC1 403 aaPredicted RBP16.07■□□□□ 0.16
CLK3-223ENST00000568488 SCYL2Q6P3W7 929 aa16.07■□□□□ 0.16
CLK3-223ENST00000568488 Q6ZVL8 140 aa16.07■□□□□ 0.16
CLK3-223ENST00000568488 STRADAQ7RTN6 431 aa16.07■□□□□ 0.16
CLK3-223ENST00000568488 HSD11B1LQ7Z5J1 315 aa16.07■□□□□ 0.16
CLK3-223ENST00000568488 PLXDC1Q8IUK5 500 aa16.07■□□□□ 0.16
CLK3-223ENST00000568488 UMODL1-AS1Q8N2C9 162 aa16.07■□□□□ 0.16
CLK3-223ENST00000568488 TTC13Q8NBP0 860 aa16.07■□□□□ 0.16
CLK3-223ENST00000568488 JOSD2Q8TAC2 188 aa16.07■□□□□ 0.16
CLK3-223ENST00000568488 CT55Q8WUE5 264 aa16.07■□□□□ 0.16
CLK3-223ENST00000568488 DTD2Q96FN9 168 aa16.07■□□□□ 0.16
CLK3-223ENST00000568488 CELF6Q96J87 481 aaKnown RBP16.07■□□□□ 0.16
CLK3-223ENST00000568488 CINPQ9BW66 212 aaPredicted RBP16.07■□□□□ 0.16
CLK3-223ENST00000568488 SIX2Q9NPC8 291 aa16.07■□□□□ 0.16
CLK3-223ENST00000568488 ZDHHC9Q9Y397 364 aa16.07■□□□□ 0.16
CLK3-223ENST00000568488 PCDHGA9Q9Y5G4 932 aaKnown RBP16.07■□□□□ 0.16
CLK3-223ENST00000568488 OTOGQ6ZRI0 2925 aa16.06■□□□□ 0.16
CLK3-223ENST00000568488 ZNF106Q9H2Y7 1883 aaKnown RBP16.06■□□□□ 0.16
CLK3-223ENST00000568488 ARHGAP10A1A4S6 786 aa16.06■□□□□ 0.16
CLK3-223ENST00000568488 GOLGA6L4A6NEF3 574 aa16.06■□□□□ 0.16
CLK3-223ENST00000568488 KRT86O43790 486 aa16.06■□□□□ 0.16
CLK3-223ENST00000568488 HEXIM1O94992 359 aaKnown RBP16.06■□□□□ 0.16
CLK3-223ENST00000568488 RECKO95980 971 aa16.06■□□□□ 0.16
CLK3-223ENST00000568488 GRNP28799 593 aaKnown RBP16.06■□□□□ 0.16
CLK3-223ENST00000568488 VIPR1P32241 457 aa16.06■□□□□ 0.16
CLK3-223ENST00000568488 GARSP41250 739 aaKnown RBP16.06■□□□□ 0.16
CLK3-223ENST00000568488 PAK1Q13153 545 aa16.06■□□□□ 0.16
CLK3-223ENST00000568488 NR6A1Q15406 480 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms