RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	TEX101	Q9BY14	249 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	PHPT1	Q9NRX4	125 aa	Predicted RBP	11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	PLA2G2E	Q9NZK7	142 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	PCDHGA9	Q9Y5G4	932 aa	Known RBP	11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	PCDHGA6	Q9Y5G7	932 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	GOLGA8S	H3BPF8	625 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	ZNF202	O95125	648 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	NFKBIA	P25963	317 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	ADRA1B	P35368	520 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	KRT9	P35527	623 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	RGR	P47804	291 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	SNX16	P57768	344 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	RPS18	P62269	152 aa	Known RBP	11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	CDK3	Q00526	305 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	PTK2	Q05397	1052 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	COBLL1	Q53SF7	1204 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	ZRANB3	Q5FWF4	1079 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	PAPD7	Q5XG87	772 aa	Known RBP	11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	DENND2C	Q68D51	928 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	SLC6A19	Q695T7	634 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	SP5	Q6BEB4	398 aa	Predicted RBP	11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	SFRP1	Q8N474	314 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	EMC1	Q8N766	993 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	FNIP1	Q8TF40	1166 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	COQ10A	Q96MF6	247 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	CRACR2A	Q9BSW2	395 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	ING2	Q9H160	280 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	ACTL8	Q9H568	366 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	ACSS2	Q9NR19	701 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	ASF1B	Q9NVP2	202 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	SLC17A4	Q9Y2C5	497 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	TMEM98	Q9Y2Y6	226 aa		11.7	□□□□□ -0.54
CLK3-222	ENST00000568232	PPP1R3G	B7ZBB8	358 aa		11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	NDUFA10	O95299	355 aa		11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	PNMA6A	P0CW24	399 aa	Predicted RBP	11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	ERCC5	P28715	1186 aa	Predicted RBP	11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	GFER	P55789	205 aa		11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	NRG1	Q02297	640 aa	Predicted RBP	11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	HHEX	Q03014	270 aa		11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	CDO1	Q16878	200 aa		11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	C15orf59	Q2T9L4	293 aa	Predicted RBP	11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	MARK2	Q7KZI7	788 aa	Known RBP	11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	DPPA4	Q7L190	304 aa		11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	RASGRP3	Q8IV61	690 aa		11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	RBMXL3	Q8N7X1	1067 aa	Known RBP	11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	C18orf8	Q96DM3	657 aa		11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	TBC1D31	Q96DN5	1066 aa		11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	NUS1	Q96E22	293 aa		11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	CEP63	Q96MT8	703 aa		11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	OR6C1	Q96RD1	312 aa		11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	TBC1D10A	Q9BXI6	508 aa		11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	LNPEP	Q9UIQ6	1025 aa		11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	TMEM59L	Q9UK28	342 aa		11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	ITGB1BP2	Q9UKP3	347 aa		11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	PADI1	Q9ULC6	663 aa		11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	ENTPD4	Q9Y227	616 aa		11.69	□□□□□ -0.54
CLK3-222	ENST00000568232	DCHS2	Q6V1P9	2916 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	GOLGA6C	A6NDK9	693 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	GOLGA6B	A6NDN3	693 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	ANKUB1	A6NFN9	424 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	RASA4B	C9J798	803 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232		J3KR12	359 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232		K7ELQ4	463 aa	Predicted RBP	11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	RASA4	O43374	803 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	DPM1	O60762	260 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	LRCH4	O75427	683 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	RECK	O95980	971 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	IVL	P07476	585 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	PLEK	P08567	350 aa	Predicted RBP	11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	CCNYL3	P0C7X3	344 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	GOLGA6D	P0CG33	693 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	SLC9A1	P19634	815 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	CLCN1	P35523	988 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	GARS	P41250	739 aa	Known RBP	11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	GABRB2	P47870	512 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	SEPHS1	P49903	392 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	NDST2	P52849	883 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	PEX6	Q13608	980 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	GRM3	Q14832	879 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	CHRNA6	Q15825	494 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	UGT8	Q16880	541 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	ISM2	Q6H9L7	571 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	FAM199X	Q6PEV8	388 aa	Predicted RBP	11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	TRIM65	Q6PJ69	517 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	ENOSF1	Q7L5Y1	443 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	SRL	Q86TD4	932 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	TRIM59	Q8IWR1	403 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	PYROXD2	Q8N2H3	581 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	CISD2	Q8N5K1	135 aa	Known RBP	11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	CCDC185	Q8N715	623 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	SHC3	Q92529	594 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	SPATA32	Q96LK8	384 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	NSMCE3	Q96MG7	304 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	OR2M4	Q96R27	311 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	RETREG1	Q9H6L5	497 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	LHX9	Q9NQ69	397 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	RMND1	Q9NWS8	449 aa		11.68	□□□□□ -0.54
CLK3-222	ENST00000568232	GOLGA6A	Q9NYA3	693 aa		11.68	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 77 ms