RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 POLG2Q9UHN1 485 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 TINAGQ9UJW2 476 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 A4GNTQ9UNA3 340 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 AAR2Q9Y312 384 aaKnown RBP2.81□□□□□ -1.96
VPS35-207ENST00000568191 MMP24Q9Y5R2 645 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 A0A0G2JLW4 131 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 CCDC196A0A1B0GTZ2 297 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 PMS2P5A8MQ11 134 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 USP17L23D6RBM5 183 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 IFNL4K9M1U5 179 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 HS3ST1O14792 307 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 ZNHIT1O43257 154 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 SPINT2O43291 252 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 CYC1P08574 325 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 HLA-DOBP13765 273 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 HSD3B1P14060 373 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 ITGA2P17301 1181 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 POLR2CP19387 275 aaPredicted RBP2.8□□□□□ -1.96
VPS35-207ENST00000568191 SHMT1P34896 483 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 DDIT3P35638 169 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 HALP42357 657 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 PAFAH1B1P43034 410 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 FASLGP48023 281 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 UFM1P61960 85 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 RPP30P78346 268 aaKnown RBP2.8□□□□□ -1.96
VPS35-207ENST00000568191 GRIK2Q13002 908 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 TDGQ13569 410 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 ZNF234Q14588 700 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 RNPS1Q15287 305 aaKnown RBP2.8□□□□□ -1.96
VPS35-207ENST00000568191 GPR68Q15743 365 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 EIF2S3LQ2VIR3 472 aaKnown RBP2.8□□□□□ -1.96
VPS35-207ENST00000568191 MYLK3Q32MK0 819 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 SFMBT2Q5VUG0 894 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 TXNDC8Q6A555 127 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 KRTAP5-1Q6L8H4 278 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 ANKRD54Q6NXT1 300 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 LDHAL6AQ6ZMR3 332 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 ZNF704Q6ZNC4 412 aaPredicted RBP2.8□□□□□ -1.96
VPS35-207ENST00000568191 PLEKHM3Q6ZWE6 761 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 CACNA2D4Q7Z3S7 1137 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 DHX40Q8IX18 779 aaKnown RBP2.8□□□□□ -1.96
VPS35-207ENST00000568191 SLC35F3Q8IY50 421 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 ZNF34Q8IZ26 560 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 C1orf87Q8N0U7 546 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 PLD5Q8N7P1 536 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 ZNF485Q8NCK3 441 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 HCAR2Q8TDS4 363 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 ELP4Q96EB1 424 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 STAMBPL1Q96FJ0 436 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 SCRN2Q96FV2 425 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 FAM110AQ9BQ89 295 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 EIF2AK1Q9BQI3 630 aaKnown RBP2.8□□□□□ -1.96
VPS35-207ENST00000568191 CSTL1Q9H114 145 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 ZNF696Q9H7X3 374 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 DDX4Q9NQI0 724 aaKnown RBP2.8□□□□□ -1.96
VPS35-207ENST00000568191 NOL12Q9UGY1 213 aaKnown RBP eCLIP2.8□□□□□ -1.96
VPS35-207ENST00000568191 GPR52Q9Y2T5 361 aa2.8□□□□□ -1.96
VPS35-207ENST00000568191 IGLV5-45A0A087WSX0 123 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 BLOC1S5-TXNDC5H3BN57 136 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 TNPO2O14787 897 aaKnown RBP2.79□□□□□ -1.96
VPS35-207ENST00000568191 SYNGR3O43761 229 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 KRT5P13647 590 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 MYOD1P15172 320 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 CORO1AP31146 461 aaKnown RBP2.79□□□□□ -1.96
VPS35-207ENST00000568191 TAF6P49848 677 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 DRG2P55039 364 aaKnown RBP2.79□□□□□ -1.96
VPS35-207ENST00000568191 LINC01547P58512 204 aaPredicted RBP2.79□□□□□ -1.96
VPS35-207ENST00000568191 BRWD1-AS2P59051 145 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 VAMP2P63027 116 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 PPIGQ13427 754 aaKnown RBP eCLIP2.79□□□□□ -1.96
VPS35-207ENST00000568191 GSTA3Q16772 222 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 CCDC96Q2M329 555 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 USP41Q3LFD5 358 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 ZNF876PQ49A33 203 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 ASPRV1Q53RT3 343 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 SIRPB2Q5JXA9 342 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 DCST1Q5T197 706 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 FRG2Q64ET8 278 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 HIST2H2BCQ6DN03 193 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 ARHGAP11AQ6P4F7 1023 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 FBXO46Q6PJ61 603 aaPredicted RBP2.79□□□□□ -1.96
VPS35-207ENST00000568191 ASB18Q6ZVZ8 466 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 FOXRED2Q8IWF2 684 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 RDM1Q8NG50 284 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 DUSP19Q8WTR2 217 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 TM9SF4Q92544 642 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 ORAI1Q96D31 301 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 LGALS12Q96DT0 336 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 SAAL1Q96ER3 474 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 ST6GAL2Q96JF0 529 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 SLC41A2Q96JW4 573 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 ZNF354BQ96LW1 612 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 PHF7Q9BWX1 381 aaPredicted RBP2.79□□□□□ -1.96
VPS35-207ENST00000568191 GPR63Q9BZJ6 419 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 EGLN1Q9GZT9 426 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 TTYH1Q9H313 450 aaPredicted RBP2.79□□□□□ -1.96
VPS35-207ENST00000568191 PLEKHA4Q9H4M7 779 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 PRKRIP1Q9H875 184 aaPredicted RBP2.79□□□□□ -1.96
VPS35-207ENST00000568191 HSF4Q9ULV5 492 aa2.79□□□□□ -1.96
VPS35-207ENST00000568191 GREB1LQ9C091 1923 aaPredicted RBP2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms