RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 ADGRE3Q9BY15 652 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 BPIFA1Q9NP55 256 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 VPS51Q9UID3 782 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 TRAF6Q9Y4K3 522 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 ANKRD36A6QL64 1941 aa20.22■□□□□ 0.83
CLN3-230ENST00000568076 ABHD14A-ACY1A0A1B0GW23 586 aa20.22■□□□□ 0.83
CLN3-230ENST00000568076 LRRC14BA6NHZ5 514 aa20.22■□□□□ 0.83
CLN3-230ENST00000568076 SMIM24O75264 130 aa20.22■□□□□ 0.83
CLN3-230ENST00000568076 SRP72O76094 671 aaKnown RBP20.22■□□□□ 0.83
CLN3-230ENST00000568076 MT-CO1P00395 513 aa20.22■□□□□ 0.83
CLN3-230ENST00000568076 LAG3P18627 525 aa20.22■□□□□ 0.83
CLN3-230ENST00000568076 ATP6V1C1P21283 382 aa20.22■□□□□ 0.83
CLN3-230ENST00000568076 AP2B1P63010 937 aa20.22■□□□□ 0.83
CLN3-230ENST00000568076 PPP1R3AQ16821 1122 aa20.22■□□□□ 0.83
CLN3-230ENST00000568076 MUM1Q2TAK8 710 aa20.22■□□□□ 0.83
CLN3-230ENST00000568076 INO80DQ53TQ3 878 aaPredicted RBP20.22■□□□□ 0.83
CLN3-230ENST00000568076 CMPK2Q5EBM0 449 aa20.22■□□□□ 0.83
CLN3-230ENST00000568076 ATXN7L2Q5T6C5 722 aaPredicted RBP20.22■□□□□ 0.83
CLN3-230ENST00000568076 CLEC6AQ6EIG7 209 aa20.22■□□□□ 0.83
CLN3-230ENST00000568076 DSELQ8IZU8 1212 aa20.22■□□□□ 0.83
CLN3-230ENST00000568076 PTGR2Q8N8N7 351 aaPredicted RBP20.22■□□□□ 0.83
CLN3-230ENST00000568076 KYQ8NBH2 561 aa20.22■□□□□ 0.83
CLN3-230ENST00000568076 HJURPQ8NCD3 748 aaPredicted RBP20.22■□□□□ 0.83
CLN3-230ENST00000568076 TMA16Q96EY4 203 aaKnown RBP20.22■□□□□ 0.83
CLN3-230ENST00000568076 BIRC8Q96P09 236 aa20.22■□□□□ 0.83
CLN3-230ENST00000568076 CRISPLD2Q9H0B8 497 aa20.22■□□□□ 0.83
CLN3-230ENST00000568076 TFB2MQ9H5Q4 396 aaKnown RBP20.22■□□□□ 0.83
CLN3-230ENST00000568076 DNMT3BQ9UBC3 853 aaKnown RBP20.22■□□□□ 0.83
CLN3-230ENST00000568076 GALPQ9UBC7 116 aa20.22■□□□□ 0.83
CLN3-230ENST00000568076 ANGPTL2Q9UKU9 493 aa20.22■□□□□ 0.83
CLN3-230ENST00000568076 FZD6O60353 706 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 FKBP6O75344 327 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 NDUFS3O75489 264 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 SIX3O95343 332 aaPredicted RBP20.21■□□□□ 0.83
CLN3-230ENST00000568076 HDCP19113 662 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 MC4RP32245 332 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 INHBCP55103 352 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 CDH13P55290 713 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 HMGCLL1Q8TB92 370 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 TCF12Q99081 682 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 TTC1Q99614 292 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 SLC30A3Q99726 388 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 S100A14Q9HCY8 104 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 PACSIN3Q9UKS6 424 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 OBSL1O75147 1896 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 K7ERQ8 282 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 PPP6CO00743 305 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 OR1I1O60431 355 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 LILRB3O75022 631 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 PRAMEF12O95522 483 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 ACADSP16219 412 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 RHOAP61586 193 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 SH3BP2P78314 561 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 CYP4F8P98187 520 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 PFKFB4Q16877 469 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 FAM217AQ8IXS0 508 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 KBTBD2Q8IY47 623 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 MAB21L3Q8N8X9 362 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 TTC16Q8NEE8 873 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 PYDC1Q8WXC3 89 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 MRPL17Q9NRX2 175 aaKnown RBP20.21■□□□□ 0.83
CLN3-230ENST00000568076 TAS2R13Q9NYV9 303 aa20.21■□□□□ 0.83
CLN3-230ENST00000568076 NRG2O14511 850 aaPredicted RBP20.2■□□□□ 0.82
CLN3-230ENST00000568076 CLTBP09497 229 aa20.2■□□□□ 0.82
CLN3-230ENST00000568076 BMP1P13497 986 aa20.2■□□□□ 0.82
CLN3-230ENST00000568076 CSF2RAP15509 400 aa20.2■□□□□ 0.82
CLN3-230ENST00000568076 WDR5P61964 334 aaKnown RBP20.2■□□□□ 0.82
CLN3-230ENST00000568076 PTPRNQ16849 979 aa20.2■□□□□ 0.82
CLN3-230ENST00000568076 UGT3A2Q3SY77 523 aa20.2■□□□□ 0.82
CLN3-230ENST00000568076 TRIM68Q6AZZ1 485 aa20.2■□□□□ 0.82
CLN3-230ENST00000568076 AAGABQ6PD74 315 aa20.2■□□□□ 0.82
CLN3-230ENST00000568076 C16orf89Q6UX73 402 aa20.2■□□□□ 0.82
CLN3-230ENST00000568076 RNF111Q6ZNA4 994 aa20.2■□□□□ 0.82
CLN3-230ENST00000568076 GAREM2Q75VX8 874 aa20.2■□□□□ 0.82
CLN3-230ENST00000568076 CMTR2Q8IYT2 770 aaKnown RBP20.2■□□□□ 0.82
CLN3-230ENST00000568076 AFAP1L2Q8N4X5 818 aa20.2■□□□□ 0.82
CLN3-230ENST00000568076 KIAA1191Q96A73 305 aa20.2■□□□□ 0.82
CLN3-230ENST00000568076 EID2BQ96D98 161 aa20.2■□□□□ 0.82
CLN3-230ENST00000568076 GPR21Q99679 349 aa20.2■□□□□ 0.82
CLN3-230ENST00000568076 DERL2Q9GZP9 239 aa20.2■□□□□ 0.82
CLN3-230ENST00000568076 SYTL2Q9HCH5 934 aa20.2■□□□□ 0.82
CLN3-230ENST00000568076 FNDC3AQ9Y2H6 1198 aaKnown RBP20.2■□□□□ 0.82
CLN3-230ENST00000568076 LCHNA4D1U4 455 aa20.19■□□□□ 0.82
CLN3-230ENST00000568076 RFC2P35250 354 aa20.19■□□□□ 0.82
CLN3-230ENST00000568076 CLNS1AP54105 237 aaKnown RBP20.19■□□□□ 0.82
CLN3-230ENST00000568076 CDH18Q13634 790 aa20.19■□□□□ 0.82
CLN3-230ENST00000568076 CTSL3PQ5NE16 218 aa20.19■□□□□ 0.82
CLN3-230ENST00000568076 APCDD1Q8J025 514 aa20.19■□□□□ 0.82
CLN3-230ENST00000568076 NSUN5Q96P11 429 aaKnown RBP20.19■□□□□ 0.82
CLN3-230ENST00000568076 CCDC68Q9H2F9 335 aa20.19■□□□□ 0.82
CLN3-230ENST00000568076 PCDHB9Q9Y5E1 797 aa20.19■□□□□ 0.82
CLN3-230ENST00000568076 OAS3Q9Y6K5 1087 aaKnown RBP20.19■□□□□ 0.82
CLN3-230ENST00000568076 LAMA2P24043 3122 aaKnown RBP20.19■□□□□ 0.82
CLN3-230ENST00000568076 STX7O15400 261 aaKnown RBP20.19■□□□□ 0.82
CLN3-230ENST00000568076 GPR39O43194 453 aa20.19■□□□□ 0.82
CLN3-230ENST00000568076 KERAO60938 352 aa20.19■□□□□ 0.82
CLN3-230ENST00000568076 CDK14O94921 469 aa20.19■□□□□ 0.82
CLN3-230ENST00000568076 HSPA1AP0DMV8 641 aaKnown RBP20.19■□□□□ 0.82
CLN3-230ENST00000568076 HSPA1BP0DMV9 641 aaKnown RBP20.19■□□□□ 0.82
CLN3-230ENST00000568076 DPP6P42658 865 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms