RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 GPS1Q13098 491 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 HENMT1Q5T8I9 393 aaKnown RBP19.48■□□□□ 0.71
CLN3-225ENST00000566824 RAET1GQ6H3X3 334 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 IL27RAQ6UWB1 636 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 ZNF765Q7L2R6 523 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 GLT6D1Q7Z4J2 308 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 TRIM74Q86UV6 250 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 HEATR4Q86WZ0 1026 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 GATAD2AQ86YP4 633 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 KLHL7Q8IXQ5 586 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 NRSN1Q8IZ57 195 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 FAM83DQ9H4H8 585 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 ERVMER34-1Q9H9K5 563 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 PKD2L2Q9NZM6 624 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 IL17CQ9P0M4 197 aa19.48■□□□□ 0.71
CLN3-225ENST00000566824 CNOT6Q9ULM6 557 aaKnown RBP19.48■□□□□ 0.71
CLN3-225ENST00000566824 PSMD3O43242 534 aa19.47■□□□□ 0.71
CLN3-225ENST00000566824 SDC3O75056 442 aa19.47■□□□□ 0.71
CLN3-225ENST00000566824 APRTP07741 180 aa19.47■□□□□ 0.71
CLN3-225ENST00000566824 LIMK1P53667 647 aa19.47■□□□□ 0.71
CLN3-225ENST00000566824 BASP1P80723 227 aaKnown RBP19.47■□□□□ 0.71
CLN3-225ENST00000566824 NFATC4Q14934 902 aa19.47■□□□□ 0.71
CLN3-225ENST00000566824 CERCAMQ5T4B2 595 aa19.47■□□□□ 0.71
CLN3-225ENST00000566824 ANKRD22Q5VYY1 191 aa19.47■□□□□ 0.71
CLN3-225ENST00000566824 RBFAQ8N0V3 343 aa19.47■□□□□ 0.71
CLN3-225ENST00000566824 FAM174AQ8TBP5 190 aa19.47■□□□□ 0.71
CLN3-225ENST00000566824 NETO1Q8TDF5 533 aa19.47■□□□□ 0.71
CLN3-225ENST00000566824 TSACCQ96A04 125 aaPredicted RBP19.47■□□□□ 0.71
CLN3-225ENST00000566824 TEX101Q9BY14 249 aa19.47■□□□□ 0.71
CLN3-225ENST00000566824 TM7SF3Q9NS93 570 aa19.47■□□□□ 0.71
CLN3-225ENST00000566824 UCKL1Q9NWZ5 548 aa19.47■□□□□ 0.71
CLN3-225ENST00000566824 HACD3Q9P035 362 aa19.47■□□□□ 0.71
CLN3-225ENST00000566824 CNOT1A5YKK6 2376 aaKnown RBP19.46■□□□□ 0.71
CLN3-225ENST00000566824 E7EVH7 732 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 CCL22O00626 93 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 GAPDHSO14556 408 aaPredicted RBP19.46■□□□□ 0.71
CLN3-225ENST00000566824 TM4SF5O14894 197 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 INPP4BO15327 924 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 GPR39O43194 453 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 MAGEC1O60732 1142 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 FUCA1P04066 466 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 TSHRP16473 764 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 HMGCLP35914 325 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 GPR1P46091 355 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 LMAN1P49257 510 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 THOP1P52888 689 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 MRPS25P82663 173 aaKnown RBP19.46■□□□□ 0.71
CLN3-225ENST00000566824 ARHGAP8P85298 464 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 POU6F1Q14863 301 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 ALG11Q2TAA5 492 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 ADAMTSL4Q6UY14 1074 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 MACC1Q6ZN28 852 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 ZNF534Q76KX8 674 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 KANSL1Q7Z3B3 1105 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 DCP2Q8IU60 420 aaKnown RBP19.46■□□□□ 0.71
CLN3-225ENST00000566824 OR13C4Q8NGS5 318 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 OR1E3Q8WZA6 343 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 CAMK1GQ96NX5 476 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 TRABDQ9H4I3 376 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 WDR26Q9H7D7 661 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 FGF22Q9HCT0 170 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 IL26Q9NPH9 171 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 MRPL40Q9NQ50 206 aaKnown RBP19.46■□□□□ 0.71
CLN3-225ENST00000566824 CASS4Q9NQ75 786 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 DNAJC28Q9NX36 388 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 TMPRSS11EQ9UL52 423 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 BTBD3Q9Y2F9 522 aa19.46■□□□□ 0.71
CLN3-225ENST00000566824 BPTFQ12830 3046 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 RGSL1A5PLK6 1076 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 ERI2A8K979 691 aaKnown RBP19.45■□□□□ 0.7
CLN3-225ENST00000566824 SLC30A4O14863 429 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 LDB2O43679 373 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 EPHA8P29322 1005 aaPredicted RBP19.45■□□□□ 0.7
CLN3-225ENST00000566824 PAFAH1B1P43034 410 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 RXRGP48443 463 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 POLD2P49005 469 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 KIAA1024LP59773 190 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 CDK3Q00526 305 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 KCNJ11Q14654 390 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 TAF1AQ15573 450 aaPredicted RBP19.45■□□□□ 0.7
CLN3-225ENST00000566824 CCDC38Q502W7 563 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 ZNF648Q5T619 568 aaPredicted RBP19.45■□□□□ 0.7
CLN3-225ENST00000566824 ENPP7Q6UWV6 458 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 NLRP8Q86W28 1048 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 PARGQ86W56 976 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 OR4K2Q8NGD2 314 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 BRSK1Q8TDC3 778 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 SAP25Q8TEE9 199 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 CPT1BQ92523 772 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 ZNF592Q92610 1267 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 PDXPQ96GD0 296 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 SRPK1Q96SB4 655 aaKnown RBP19.45■□□□□ 0.7
CLN3-225ENST00000566824 ARFGAP3Q9NP61 516 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 KCTD5Q9NXV2 234 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP19.45■□□□□ 0.7
CLN3-225ENST00000566824 PCYOX1Q9UHG3 505 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 TMEM98Q9Y2Y6 226 aa19.45■□□□□ 0.7
CLN3-225ENST00000566824 OAS3Q9Y6K5 1087 aaKnown RBP19.45■□□□□ 0.7
CLN3-225ENST00000566824 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP19.44■□□□□ 0.7
CLN3-225ENST00000566824 CCDC78A2IDD5 438 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms