RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 TCP11X1B4DZS4 312 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 PPP1R3GB7ZBB8 358 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 J3KR12 359 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 CREB3O43889 395 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 CREG1O75629 220 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 PALMO75781 387 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 IVLP07476 585 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 CCNYL3P0C7X3 344 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 PON1P27169 355 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 CASP14P31944 242 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 CDH5P33151 784 aaPredicted RBP7.29□□□□□ -1.24
VPS4A-203ENST00000564399 RGRP47804 291 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 FASLGP48023 281 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 CDK3Q00526 305 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 HHEXQ03014 270 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 PAK1Q13153 545 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 NFATC2Q13469 925 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 SEMA5AQ13591 1074 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 PARP15Q460N3 678 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 CCDC14Q49A88 953 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 NAA35Q5VZE5 725 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 MARK2Q7KZI7 788 aaKnown RBP7.29□□□□□ -1.24
VPS4A-203ENST00000564399 ARCQ7LC44 396 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 LYSMD3Q7Z3D4 306 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 SLFN11Q7Z7L1 901 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 RASGRP3Q8IV61 690 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 APLFQ8IW19 511 aaPredicted RBP7.29□□□□□ -1.24
VPS4A-203ENST00000564399 PYROXD2Q8N2H3 581 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 TSEN2Q8NCE0 465 aaKnown RBP7.29□□□□□ -1.24
VPS4A-203ENST00000564399 GPT2Q8TD30 523 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 SLC37A2Q8TED4 501 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 PDCD6IPQ8WUM4 868 aaKnown RBP7.29□□□□□ -1.24
VPS4A-203ENST00000564399 MOCOSQ96EN8 888 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 COQ10AQ96MF6 247 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 SLC25A23Q9BV35 468 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 CINPQ9BW66 212 aaPredicted RBP7.29□□□□□ -1.24
VPS4A-203ENST00000564399 TRIM55Q9BYV6 548 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 CATSPERBQ9H7T0 1116 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 SLAMF7Q9NQ25 335 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 KCTD5Q9NXV2 234 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 LUZP4Q9P127 313 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 RCOR3Q9P2K3 495 aaPredicted RBP7.29□□□□□ -1.24
VPS4A-203ENST00000564399 B4GALT6Q9UBX8 382 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 TMEM98Q9Y2Y6 226 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 CCDC168Q8NDH2 2452 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 PIKFYVEQ9Y2I7 2098 aa7.29□□□□□ -1.24
VPS4A-203ENST00000564399 MYO7BQ6PIF6 2116 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 FBN2P35556 2912 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 BIN1O00499 593 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 PRAMEF11O60813 436 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 KIAA0754O94854 1291 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 NDUFA10O95299 355 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 LSM8O95777 96 aaKnown RBP7.28□□□□□ -1.24
VPS4A-203ENST00000564399 CYP11B1P15538 503 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 ZNF28P17035 718 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 NFKBIAP25963 317 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 ETV3P41162 512 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 GPR1P46091 355 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 CSNK1DP48730 415 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 SCNN1BP51168 640 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 CCL11P51671 97 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 HDAC4P56524 1084 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 DNASE1L3Q13609 305 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 NAA30Q147X3 362 aaPredicted RBP7.28□□□□□ -1.24
VPS4A-203ENST00000564399 CNGA3Q16281 694 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 PRR30Q53SZ7 412 aaPredicted RBP7.28□□□□□ -1.24
VPS4A-203ENST00000564399 CHCHD2P9Q5T1J5 151 aaPredicted RBP7.28□□□□□ -1.24
VPS4A-203ENST00000564399 C1QL3Q5VWW1 255 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 SMYD5Q6GMV2 418 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 SCYL2Q6P3W7 929 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 STRADAQ7RTN6 431 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 GALNT13Q8IUC8 556 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 TP53INP2Q8IXH6 220 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 FAM71AQ8IYT1 594 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 UMODL1-AS1Q8N2C9 162 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 SFRP1Q8N474 314 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 JOSD2Q8TAC2 188 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 FNIP1Q8TF40 1166 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 FAM172AQ8WUF8 416 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 NTAN1Q96AB6 310 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 SH3KBP1Q96B97 665 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 ECHDC3Q96DC8 303 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 TCTN2Q96GX1 697 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 CELF6Q96J87 481 aaKnown RBP7.28□□□□□ -1.24
VPS4A-203ENST00000564399 ELMO2Q96JJ3 720 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 C5orf34Q96MH7 638 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 MFRPQ9BY79 579 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 ZNF768Q9H5H4 540 aaKnown RBP7.28□□□□□ -1.24
VPS4A-203ENST00000564399 SARS2Q9NP81 518 aaKnown RBP7.28□□□□□ -1.24
VPS4A-203ENST00000564399 SIX2Q9NPC8 291 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 ACSS2Q9NR19 701 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 DONSONQ9NYP3 566 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 LNPEPQ9UIQ6 1025 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 ERRFI1Q9UJM3 462 aaPredicted RBP7.28□□□□□ -1.24
VPS4A-203ENST00000564399 PADI1Q9ULC6 663 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 SLC17A4Q9Y2C5 497 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 ZDHHC9Q9Y397 364 aa7.28□□□□□ -1.24
VPS4A-203ENST00000564399 GTPBP10A4D1E9 387 aaKnown RBP7.27□□□□□ -1.25
VPS4A-203ENST00000564399 ARHGAP42A6NI28 874 aa7.27□□□□□ -1.25
VPS4A-203ENST00000564399 ARGFXA6NJG6 315 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms