RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 SSR1P43307 286 aaKnown RBP17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 STC1P52823 247 aa17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 TAS2R40P59535 323 aa17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 DENND2CQ68D51 928 aa17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 RAET1GQ6H3X3 334 aa17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 INO80CQ6PI98 192 aaPredicted RBP17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 FOXR1Q6PIV2 292 aa17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 CPNE8Q86YQ8 564 aa17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 NRSN1Q8IZ57 195 aa17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 Q8N9G6 341 aaPredicted RBP17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 PTCD2Q8WV60 388 aaKnown RBP17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 HDAC11Q96DB2 347 aa17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 FOXP3Q9BZS1 431 aa17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 XPO4Q9C0E2 1151 aaKnown RBP17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 B3GNT4Q9C0J1 378 aa17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 RBM22Q9NW64 420 aaKnown RBP eCLIP17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 TAAR2Q9P1P5 351 aa17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 SSU72P8A0A1W2PR75 194 aa17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 CAPN8A6NHC0 703 aa17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 TPM3P06753 285 aa17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 TMEM253P0C7T8 217 aa17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 SLC5A2P31639 672 aa17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 ADCY8P40145 1251 aa17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 GPR3P46089 330 aa17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 GPR1P46091 355 aa17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 GNPDA1P46926 289 aa17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 CTBSQ01459 385 aa17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 DSC2Q02487 901 aa17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 ITKQ08881 620 aa17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 SQSTM1Q13501 440 aa17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 ARHGAP40Q5TG30 622 aa17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 RFLNAQ6ZTI6 216 aa17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 VSIG1Q86XK7 387 aa17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 OR8K1Q8NGG5 319 aa17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 ZDHHC1Q8WTX9 485 aa17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 CTNNBL1Q8WYA6 563 aaPredicted RBP17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 TTC9Q92623 222 aa17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 AP2M1Q96CW1 435 aa17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 COX14Q96I36 57 aa17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 ATXN7L1Q9ULK2 861 aaPredicted RBP17.15■□□□□ 0.34
VPS9D1-203ENST00000563798 ATMQ13315 3056 aa17.14■□□□□ 0.33
VPS9D1-203ENST00000563798 ZW10O43264 779 aa17.14■□□□□ 0.33
VPS9D1-203ENST00000563798 CPNE6O95741 557 aa17.14■□□□□ 0.33
VPS9D1-203ENST00000563798 PRB1P04280 392 aa17.14■□□□□ 0.33
VPS9D1-203ENST00000563798 PTMSP20962 102 aa17.14■□□□□ 0.33
VPS9D1-203ENST00000563798 CA4P22748 312 aa17.14■□□□□ 0.33
VPS9D1-203ENST00000563798 POLD2P49005 469 aa17.14■□□□□ 0.33
VPS9D1-203ENST00000563798 GBE1Q04446 702 aa17.14■□□□□ 0.33
VPS9D1-203ENST00000563798 NIPAL4Q0D2K0 466 aa17.14■□□□□ 0.33
VPS9D1-203ENST00000563798 SLC10A2Q12908 348 aaPredicted RBP17.14■□□□□ 0.33
VPS9D1-203ENST00000563798 TRIM14Q14142 442 aa17.14■□□□□ 0.33
VPS9D1-203ENST00000563798 TMPRSS9Q7Z410 1059 aa17.14■□□□□ 0.33
VPS9D1-203ENST00000563798 NAGSQ8N159 534 aa17.14■□□□□ 0.33
VPS9D1-203ENST00000563798 SCAMP4Q969E2 229 aa17.14■□□□□ 0.33
VPS9D1-203ENST00000563798 RNF157Q96PX1 679 aa17.14■□□□□ 0.33
VPS9D1-203ENST00000563798 SMIM14Q96QK8 99 aa17.14■□□□□ 0.33
VPS9D1-203ENST00000563798 PACSIN1Q9BY11 444 aa17.14■□□□□ 0.33
VPS9D1-203ENST00000563798 DTLQ9NZJ0 730 aa17.14■□□□□ 0.33
VPS9D1-203ENST00000563798 LOXL2Q9Y4K0 774 aa17.14■□□□□ 0.33
VPS9D1-203ENST00000563798 CFAP46Q8IYW2 2715 aa17.14■□□□□ 0.33
VPS9D1-203ENST00000563798 ARHGEF17Q96PE2 2063 aaPredicted RBP17.14■□□□□ 0.33
VPS9D1-203ENST00000563798 GCN1Q92616 2671 aaKnown RBP17.14■□□□□ 0.33
VPS9D1-203ENST00000563798 UNC13CQ8NB66 2214 aa17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 SCN8AQ9UQD0 1980 aa17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 A0A0U1RQS6 177 aa17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 ECEL1O95672 775 aa17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 HLA-DQB2P05538 268 aa17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 KDELR1P24390 212 aa17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 AK4P27144 223 aaPredicted RBP17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 EPHB1P54762 984 aa17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 MAZP56270 477 aaKnown RBP17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 PPIDQ08752 370 aaKnown RBP17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 LRP8Q14114 963 aa17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 ZSCAN23Q3MJ62 389 aa17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 PYCR3Q53H96 274 aa17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 PIM3Q86V86 326 aa17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 CCDC13Q8IYE1 715 aa17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 ZNF843Q8N446 348 aa17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 EXD1Q8NHP7 514 aa17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 RAPGEF5Q92565 580 aa17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 OR2M4Q96R27 311 aa17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 CCNL2Q96S94 520 aaPredicted RBP17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 CMKLR1Q99788 373 aa17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 CDH19Q9H159 772 aa17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 PCDH9Q9HC56 1237 aa17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 CD84Q9UIB8 345 aa17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 CHKBQ9Y259 395 aa17.13■□□□□ 0.33
VPS9D1-203ENST00000563798 RGSL1A5PLK6 1076 aa17.12■□□□□ 0.33
VPS9D1-203ENST00000563798 RHPN2P1A8MT19 583 aa17.12■□□□□ 0.33
VPS9D1-203ENST00000563798 EFSO43281 561 aa17.12■□□□□ 0.33
VPS9D1-203ENST00000563798 MTA2O94776 668 aa17.12■□□□□ 0.33
VPS9D1-203ENST00000563798 MAP3K6O95382 1288 aa17.12■□□□□ 0.33
VPS9D1-203ENST00000563798 MMP2P08253 660 aa17.12■□□□□ 0.33
VPS9D1-203ENST00000563798 JMJD7P0C870 316 aa17.12■□□□□ 0.33
VPS9D1-203ENST00000563798 HGFP14210 728 aa17.12■□□□□ 0.33
VPS9D1-203ENST00000563798 CD1CP29017 333 aa17.12■□□□□ 0.33
VPS9D1-203ENST00000563798 GJC1P36383 396 aa17.12■□□□□ 0.33
VPS9D1-203ENST00000563798 ARHGAP25P42331 645 aa17.12■□□□□ 0.33
VPS9D1-203ENST00000563798 IFI35P80217 286 aaPredicted RBP17.12■□□□□ 0.33
VPS9D1-203ENST00000563798 CFHR1Q03591 330 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms