RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.54■□□□□ 0.24
VPS4A-202ENST00000562754 SCAMP4Q969E2 229 aa16.54■□□□□ 0.24
VPS4A-202ENST00000562754 HDAC10Q969S8 669 aa16.54■□□□□ 0.24
VPS4A-202ENST00000562754 NUS1Q96E22 293 aa16.54■□□□□ 0.24
VPS4A-202ENST00000562754 CDKN2AIPNLQ96HQ2 116 aa16.54■□□□□ 0.24
VPS4A-202ENST00000562754 SPACA7Q96KW9 195 aa16.54■□□□□ 0.24
VPS4A-202ENST00000562754 C19orf43Q9BQ61 176 aa16.54■□□□□ 0.24
VPS4A-202ENST00000562754 ABCG8Q9H221 673 aa16.54■□□□□ 0.24
VPS4A-202ENST00000562754 SUDS3Q9H7L9 328 aaPredicted RBP16.54■□□□□ 0.24
VPS4A-202ENST00000562754 FNDC3AQ9Y2H6 1198 aaKnown RBP16.54■□□□□ 0.24
VPS4A-202ENST00000562754 FAM169AQ9Y6X4 670 aa16.54■□□□□ 0.24
VPS4A-202ENST00000562754 CEP192Q8TEP8 1941 aa16.54■□□□□ 0.24
VPS4A-202ENST00000562754 CCDC151A5D8V7 595 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 RGSL1A5PLK6 1076 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 PRR33A8MZF0 331 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 H7C0S8 307 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 GPR39O43194 453 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 LATO43561 262 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 IGHV4-34P06331 123 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 SPAM1P38567 509 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 HADHAP40939 763 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 ARCN1P48444 511 aaKnown RBP16.53■□□□□ 0.24
VPS4A-202ENST00000562754 PMS2P54278 862 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 PEX6Q13608 980 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 AGERQ15109 404 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 UAP1Q16222 522 aaPredicted RBP16.53■□□□□ 0.24
VPS4A-202ENST00000562754 USP39Q53GS9 565 aaKnown RBP16.53■□□□□ 0.24
VPS4A-202ENST00000562754 HENMT1Q5T8I9 393 aaKnown RBP16.53■□□□□ 0.24
VPS4A-202ENST00000562754 FAM151BQ6UXP7 276 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 TRMT10CQ7L0Y3 403 aaKnown RBP16.53■□□□□ 0.24
VPS4A-202ENST00000562754 ZNF765Q7L2R6 523 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 LONP2Q86WA8 852 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 PALM2Q8IXS6 379 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 RAVER1Q8IY67 606 aaKnown RBP16.53■□□□□ 0.24
VPS4A-202ENST00000562754 NRSN1Q8IZ57 195 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 ABCA7Q8IZY2 2146 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 PELI3Q8N2H9 469 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 GSDMBQ8TAX9 411 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 NELL1Q92832 810 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 TTC25Q96NG3 672 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 PLEKHG4BQ96PX9 1271 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 IL26Q9NPH9 171 aa16.53■□□□□ 0.24
VPS4A-202ENST00000562754 CUL9Q8IWT3 2517 aa16.52■□□□□ 0.24
VPS4A-202ENST00000562754 RAD51BO15315 384 aa16.52■□□□□ 0.24
VPS4A-202ENST00000562754 VAPBO95292 243 aa16.52■□□□□ 0.24
VPS4A-202ENST00000562754 ACSL3O95573 720 aa16.52■□□□□ 0.24
VPS4A-202ENST00000562754 GOT2P00505 430 aaKnown RBP16.52■□□□□ 0.24
VPS4A-202ENST00000562754 C1QAP02745 245 aa16.52■□□□□ 0.24
VPS4A-202ENST00000562754 GSTA2P09210 222 aa16.52■□□□□ 0.24
VPS4A-202ENST00000562754 PRSS56P0CW18 603 aa16.52■□□□□ 0.24
VPS4A-202ENST00000562754 TSHRP16473 764 aa16.52■□□□□ 0.24
VPS4A-202ENST00000562754 MC4RP32245 332 aa16.52■□□□□ 0.24
VPS4A-202ENST00000562754 CA5AP35218 305 aa16.52■□□□□ 0.24
VPS4A-202ENST00000562754 CCR5P51681 352 aa16.52■□□□□ 0.24
VPS4A-202ENST00000562754 PRAMEP78395 509 aa16.52■□□□□ 0.24
VPS4A-202ENST00000562754 SRSF5Q13243 272 aaKnown RBP16.52■□□□□ 0.24
VPS4A-202ENST00000562754 FRG1Q14331 258 aaKnown RBP16.52■□□□□ 0.24
VPS4A-202ENST00000562754 CHRNA6Q15825 494 aa16.52■□□□□ 0.24
VPS4A-202ENST00000562754 LONRF1Q17RB8 773 aa16.52■□□□□ 0.24
VPS4A-202ENST00000562754 WSCD2Q2TBF2 565 aa16.52■□□□□ 0.24
VPS4A-202ENST00000562754 AFTPHQ6ULP2 937 aa16.52■□□□□ 0.24
VPS4A-202ENST00000562754 TP53I13Q8NBR0 393 aaPredicted RBP16.52■□□□□ 0.24
VPS4A-202ENST00000562754 AGAP2Q99490 1192 aa16.52■□□□□ 0.24
VPS4A-202ENST00000562754 KLF6Q99612 283 aaPredicted RBP16.52■□□□□ 0.24
VPS4A-202ENST00000562754 RIOK2Q9BVS4 552 aaKnown RBP16.52■□□□□ 0.24
VPS4A-202ENST00000562754 SLC17A9Q9BYT1 436 aa16.52■□□□□ 0.24
VPS4A-202ENST00000562754 FAM83DQ9H4H8 585 aa16.52■□□□□ 0.24
VPS4A-202ENST00000562754 VPS37BQ9H9H4 285 aa16.52■□□□□ 0.24
VPS4A-202ENST00000562754 EBF2Q9HAK2 575 aa16.52■□□□□ 0.24
VPS4A-202ENST00000562754 GLYATL1P3A0A0U1RQE8 302 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 TCRBV9S1A1TA0A576 114 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 GOLGA8KD6RF30 607 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 GOLGA8TH3BQL2 631 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 K7ESM1 405 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 RIPK2O43353 540 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 NDUFS2O75306 463 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 FSBPO95073 299 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 PRAMEF1O95521 474 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 PAK4O96013 591 aaPredicted RBP16.51■□□□□ 0.23
VPS4A-202ENST00000562754 SOD1P00441 154 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 SP9P0CG40 484 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 H2AFXP16104 143 aaPredicted RBP16.51■□□□□ 0.23
VPS4A-202ENST00000562754 PAMP19021 973 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 FOXN2P32314 431 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 IRF4Q15306 451 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 ANGPT1Q15389 498 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 MAP9Q49MG5 647 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 ZDHHC20Q5W0Z9 365 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 KDM7AQ6ZMT4 941 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 C3orf62Q6ZUJ4 267 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 KCNMB4Q86W47 210 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 DEFB119Q8N690 84 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 OR6P1Q8NGX9 317 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 ASB12Q8WXK4 309 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 BIRC7Q96CA5 298 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 AP2M1Q96CW1 435 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 CERS2Q96G23 380 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 PCED1AQ9H1Q7 454 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 FZD3Q9NPG1 666 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 MBNL1Q9NR56 388 aaKnown RBP16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms