RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 PHTF1Q9UMS5 762 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 CNTN6Q9UQ52 1028 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 KCNK6Q9Y257 313 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 SLC27A6Q9Y2P4 619 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 STON1Q9Y6Q2 735 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.23□□□□□ -0.93
VPS39-205ENST00000562258 CCDC162PA2VCL2 907 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 MGAT4DA6NG13 374 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 B4DGG1 531 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 AIM2O14862 343 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 ANGPT2O15123 496 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 USP1O94782 785 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 ENO1P06733 434 aaKnown RBP9.22□□□□□ -0.93
VPS39-205ENST00000562258 TCN1P20061 433 aaPredicted RBP9.22□□□□□ -0.93
VPS39-205ENST00000562258 MAOBP27338 520 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 MDH1P40925 334 aaKnown RBP9.22□□□□□ -0.93
VPS39-205ENST00000562258 CTSOP43234 321 aaPredicted RBP9.22□□□□□ -0.93
VPS39-205ENST00000562258 CYP4F2P78329 520 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 TEAD4Q15561 434 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 PRSS58Q8IYP2 241 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 RIBC1Q8N443 379 aaPredicted RBP9.22□□□□□ -0.93
VPS39-205ENST00000562258 NPWQ8N729 165 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 PTGR2Q8N8N7 351 aaPredicted RBP9.22□□□□□ -0.93
VPS39-205ENST00000562258 PNPLA1Q8N8W4 532 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 SLC35B2Q8TB61 432 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 STYXQ8WUJ0 223 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 WWP1Q9H0M0 922 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 PPCSQ9HAB8 311 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 TMEM248Q9NWD8 314 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 NCDNQ9UBB6 729 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 LZTS1Q9Y250 596 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 TTC3P53804 2025 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 MAN2B1O00754 1011 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 MID1O15344 667 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 GCATO75600 419 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 LAMP2P13473 410 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 CHRNA6Q15825 494 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 LRRC8BQ6P9F7 803 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 LRIG3Q6UXM1 1119 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 NRSN1Q8IZ57 195 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 DNAJC5GQ8N7S2 189 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 STAG3L4Q8TBR4 150 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 FUT8Q9BYC5 575 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 FAM129AQ9BZQ8 928 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 TMEM30AQ9NV96 361 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 MAP10Q9P2G4 905 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 ZNF212Q9UDV6 495 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 ZNF831Q5JPB2 1677 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 C16orf96A6NNT2 1141 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 H3BMM5 538 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 GYG2O15488 501 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 KDELR3O43731 214 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 PRAMEF11O60813 436 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 SLC2A4P14672 509 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 CRABP2P29373 138 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 GALK1P51570 392 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 DRG2P55039 364 aaKnown RBP9.22□□□□□ -0.93
VPS39-205ENST00000562258 HADHBP55084 474 aaKnown RBP9.22□□□□□ -0.93
VPS39-205ENST00000562258 ZNF460Q14592 562 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 SIRPB2Q5JXA9 342 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 MPP5Q8N3R9 675 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 RASGEF1CQ8N431 466 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 ZSWIM3Q96MP5 696 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 ZNF711Q9Y462 761 aa9.22□□□□□ -0.93
VPS39-205ENST00000562258 NRXN2Q9P2S2 1712 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 ATP6AP2A0A1C7CYW4 349 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 A0A1W2PQU0 124 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 ANKDD1BA6NHY2 528 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 RHPN2P1A8MT19 583 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 UPK3BL1B0FP48 263 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 UPK3BL2E5RIL1 263 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 TRIM13O60858 407 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 ATP6AP2O75787 350 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 ZWINTO95229 277 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 KLKB1P03952 638 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 C2P06681 752 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 SLC6A4P31645 630 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 GJA4P35212 333 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 IRAK1P51617 712 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 SLC10A2Q12908 348 aaPredicted RBP9.21□□□□□ -0.93
VPS39-205ENST00000562258 CUL3Q13618 768 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 PPM1JQ5JR12 505 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 TSTD2Q5T7W7 516 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 ANKRD54Q6NXT1 300 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 TRPC4APQ8TEL6 797 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 FCRL5Q96RD9 977 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 HBEGFQ99075 208 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 SLC38A3Q99624 504 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 C12orf65Q9H3J6 166 aaKnown RBP9.21□□□□□ -0.93
VPS39-205ENST00000562258 RIC8BQ9NVN3 520 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 SLC2A6Q9UGQ3 507 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 TCAF1Q9Y4C2 921 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 ACACAQ13085 2346 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 KIAA1551Q9HCM1 1747 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 A0A1W2PQ67 120 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 E9PBE3 544 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 SPECC1L-ADORA2AF8WAN1 911 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 ALOX15BO15296 676 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 KLHL41O60662 606 aa9.21□□□□□ -0.93
VPS39-205ENST00000562258 ALAS2P22557 587 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms