RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 NCK1P16333 377 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 FDXRP22570 491 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 PBX3P40426 434 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 NDST2P52849 883 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 RPL26P61254 145 aaKnown RBP12.86□□□□□ -0.35
LDLR-207ENST00000558013 PRKCQQ04759 706 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 TAF10Q12962 218 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 CLLU1OSQ5K130 101 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 NADSYN1Q6IA69 706 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 UGT3A1Q6NUS8 523 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 MSANTD2Q6P1R3 559 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 C17orf99Q6UX52 265 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 ZBTB49Q6ZSB9 765 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 SLC15A3Q8IY34 581 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 CLYBLQ8N0X4 340 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 DNAJB14Q8TBM8 379 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 L3HYPDHQ96EM0 354 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 FAR2Q96K12 515 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 HBEGFQ99075 208 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 CMTM6Q9NX76 183 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 SLC4A7Q9Y6M7 1214 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 SCN10AQ9Y5Y9 1956 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 TDRD15B5MCY1 1934 aaKnown RBP12.86□□□□□ -0.35
LDLR-207ENST00000558013 CROCCQ5TZA2 2017 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 WASH4PA8MWX3 477 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 SCAMP3O14828 347 aaKnown RBP12.86□□□□□ -0.35
LDLR-207ENST00000558013 CLGNO14967 610 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 TSPAN3O60637 253 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 SLC7A1P30825 629 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 TSNQ15631 228 aaKnown RBP12.86□□□□□ -0.35
LDLR-207ENST00000558013 KCNA10Q16322 511 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 FUT11Q495W5 492 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 TMEM126BQ8IUX1 230 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 PHYKPLQ8IUZ5 450 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 OR7D4Q8NG98 312 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 HIC2Q96JB3 615 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 TRIM62Q9BVG3 475 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 MRPS26Q9BYN8 205 aaKnown RBP12.86□□□□□ -0.35
LDLR-207ENST00000558013 MARCH2Q9P0N8 246 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 SCML2Q9UQR0 700 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 AZIN1O14977 448 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 HTRA2O43464 458 aaPredicted RBP12.85□□□□□ -0.35
LDLR-207ENST00000558013 IGHA2P01877 340 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 BMP1P13497 986 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 EEF1DP29692 281 aaKnown RBP12.85□□□□□ -0.35
LDLR-207ENST00000558013 CASP2P42575 452 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 SERINC3Q13530 473 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 LAMB3Q13751 1172 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 SAMD4BQ5PRF9 694 aaKnown RBP12.85□□□□□ -0.35
LDLR-207ENST00000558013 CBR4Q8N4T8 237 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 AFAP1L2Q8N4X5 818 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 TEX26Q8N6G2 289 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 TSPAN14Q8NG11 270 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 STON2Q8WXE9 905 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 ATOH8Q96SQ7 321 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 ETAA1Q9NY74 926 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 HSFX1Q9UBD0 423 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 POLG2Q9UHN1 485 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 DOCK4Q8N1I0 1966 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 SUPT3HB4E1H0 165 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 OR1I1O60431 355 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 SUPT3HO75486 399 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 SEC24DO94855 1032 aaPredicted RBP12.85□□□□□ -0.35
LDLR-207ENST00000558013 PAPSS2O95340 614 aaPredicted RBP12.85□□□□□ -0.35
LDLR-207ENST00000558013 CALRP27797 417 aaKnown RBP12.85□□□□□ -0.35
LDLR-207ENST00000558013 ZNF157P51786 506 aaPredicted RBP12.85□□□□□ -0.35
LDLR-207ENST00000558013 STX1BP61266 288 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 PLOD1Q02809 727 aaPredicted RBP12.85□□□□□ -0.35
LDLR-207ENST00000558013 MAPRE2Q15555 327 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 AAK1Q2M2I8 961 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 HABP4Q5JVS0 413 aaKnown RBP12.85□□□□□ -0.35
LDLR-207ENST00000558013 RSPO2Q6UXX9 243 aaPredicted RBP12.85□□□□□ -0.35
LDLR-207ENST00000558013 ZNF598Q86UK7 904 aaKnown RBP12.85□□□□□ -0.35
LDLR-207ENST00000558013 EPHX4Q8IUS5 362 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 FAM47BQ8NA70 645 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 OR4L1Q8NH43 312 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 TMEM74Q96NL1 305 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 CCT7Q99832 543 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 C1orf50Q9BV19 199 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 SOX17Q9H6I2 414 aaPredicted RBP12.85□□□□□ -0.35
LDLR-207ENST00000558013 ZNF225Q9UK10 706 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 MYO16Q9Y6X6 1858 aa12.85□□□□□ -0.35
LDLR-207ENST00000558013 hCG_2014768A0A024R1R8 64 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 DLGAP1O14490 977 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 RPS6KA3P51812 740 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 DYNC1I2Q13409 638 aaKnown RBP12.84□□□□□ -0.35
LDLR-207ENST00000558013 MAP7D1Q3KQU3 841 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 FAM45BPQ6NSW5 357 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 CARM1Q86X55 608 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 FAM45AQ8TCE6 357 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 GIPC2Q8TF65 315 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 FBXO32Q969P5 355 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 CDK15Q96Q40 435 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 GPATCH1Q9BRR8 931 aaKnown RBP12.84□□□□□ -0.35
LDLR-207ENST00000558013 SPON2Q9BUD6 331 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 MUC3BQ9H195 1237 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 EPB41L1Q9H4G0 881 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 BPIFA1Q9NP55 256 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 CEPT1Q9Y6K0 416 aa12.84□□□□□ -0.35
LDLR-207ENST00000558013 BAIAP3O94812 1187 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms