RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 PGRP06401 933 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 TGM2P21980 687 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 PCMT1P22061 227 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 RGS1Q08116 209 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 BMPR2Q13873 1038 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 CA9Q16790 459 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 ZNF404Q494X3 552 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 METTL24Q5JXM2 366 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 TBCELQ5QJ74 424 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 EFL1Q7Z2Z2 1120 aaKnown RBP13.8□□□□□ -0.2
SHMT2-226ENST00000556825 ZSWIM9Q86XI8 627 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 SCUBE3Q8IX30 993 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 DDIASQ8IXT1 998 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 MAPK15Q8TD08 544 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 SLC45A3Q96JT2 553 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 CPXM1Q96SM3 734 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 ZNF385DQ9H6B1 395 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 GREM2Q9H772 168 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 CATSPERBQ9H7T0 1116 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 TBC1D22BQ9NU19 505 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 ING3Q9NXR8 418 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 RGS17Q9UGC6 210 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-226ENST00000556825 TLK1Q9UKI8 766 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 USP22Q9UPT9 525 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 MFHAS1Q9Y4C4 1052 aa13.8□□□□□ -0.2
SHMT2-226ENST00000556825 COL1A1P02452 1464 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-226ENST00000556825 CIB4A0PJX0 185 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 FAM149AA5PLN7 773 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 TCAF2A6NFQ2 919 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 FZD6O60353 706 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 FGRP09769 529 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 ADORA3P0DMS8 318 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 PSMA4P25789 261 aaKnown RBP13.79□□□□□ -0.2
SHMT2-226ENST00000556825 DGKQP52824 942 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 MYL7Q01449 175 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 FMO1Q01740 532 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 PCDH1Q08174 1060 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 NFX1Q12986 1120 aaKnown RBP13.79□□□□□ -0.2
SHMT2-226ENST00000556825 SEMA3AQ14563 771 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 PCLAFQ15004 111 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 BMT2Q1RMZ1 405 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 C2CD6Q53TS8 623 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 HYIQ5T013 277 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 ACAD10Q6JQN1 1059 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 C16orf62Q7Z3J2 963 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 PIGZQ86VD9 579 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 DHFR2Q86XF0 187 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 KDM1BQ8NB78 822 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 ZNF680Q8NEM1 530 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 FAM110BQ8TC76 370 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 SLC22A17Q8WUG5 538 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 YIPF6Q96EC8 236 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 KLHL15Q96M94 604 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 EHD3Q9NZN3 535 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 CD300AQ9UGN4 299 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 PGAP2Q9UHJ9 254 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 NUFIP1Q9UHK0 495 aaKnown RBP13.79□□□□□ -0.2
SHMT2-226ENST00000556825 EMCNQ9ULC0 261 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 DUOX1Q9NRD9 1551 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 HACD1B0YJ81 288 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 SMIM22K7EJ46 135 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 CD58P19256 250 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 SHMT2P34897 504 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 GBX2P52951 348 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-226ENST00000556825 RPP38P78345 283 aaKnown RBP13.79□□□□□ -0.2
SHMT2-226ENST00000556825 EN1Q05925 392 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-226ENST00000556825 ANKRD39Q53RE8 183 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 RAP1GAP2Q684P5 730 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 TIGD3Q6B0B8 471 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 P2RY8Q86VZ1 359 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 LDHDQ86WU2 507 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 ADGRG3Q86Y34 549 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 PLD3Q8IV08 490 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 LMO3Q8TAP4 145 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 LPPQ93052 612 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 C8orf37Q96NL8 207 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 APBA2Q99767 749 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 NUAK2Q9H093 628 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 TMEM117Q9H0C3 514 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 C8orf33Q9H7E9 229 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-226ENST00000556825 TMLHEQ9NVH6 421 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 TMEM181Q9P2C4 612 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 SLC23A1Q9UHI7 598 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 ANAPC2Q9UJX6 822 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 RPH3AQ9Y2J0 694 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-226ENST00000556825 PCDHGB6Q9Y5F9 930 aa13.79□□□□□ -0.2
SHMT2-226ENST00000556825 TCRBV7S3A2A0A539 114 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 CXorf49A8MYA2 514 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-226ENST00000556825 H0Y626 953 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 TMEM63AO94886 807 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 PROSCO94903 275 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 AMHP03971 560 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 HOXC13P31276 330 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 TSPAN7P41732 249 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 SLAMF1Q13291 335 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 ACOX1Q15067 660 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 GPATCH4Q5T3I0 446 aaKnown RBP13.78□□□□□ -0.2
SHMT2-226ENST00000556825 NRARPQ7Z6K4 114 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 C10orf107Q8IVU9 208 aa13.78□□□□□ -0.2
SHMT2-226ENST00000556825 SLFN12Q8IYM2 578 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms