RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 UMODL1-AS1Q8N2C9 162 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 RYBPQ8N488 228 aaPredicted RBP10.07□□□□□ -0.8
SCFD1-220ENST00000556486 RTL3Q8N8U3 475 aaKnown RBP10.07□□□□□ -0.8
SCFD1-220ENST00000556486 TP53I13Q8NBR0 393 aaPredicted RBP10.07□□□□□ -0.8
SCFD1-220ENST00000556486 RCBTB1Q8NDN9 531 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 JOSD2Q8TAC2 188 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 ENOX1Q8TC92 643 aaKnown RBP10.07□□□□□ -0.8
SCFD1-220ENST00000556486 GPT2Q8TD30 523 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 GDAP1L1Q96MZ0 367 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 SLC12A9Q9BXP2 914 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 SEMA6CQ9H3T2 930 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 RDH14Q9HBH5 336 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 DNAI1Q9UI46 699 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 ACSL6Q9UKU0 697 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 SRPK3Q9UPE1 567 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 COQ6Q9Y2Z9 468 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 RNF215Q9Y6U7 377 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 ITPR2Q14571 2701 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 LRBAP50851 2863 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 CRYBG3Q68DQ2 2970 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 TCRBV5S1A1TA0A578 114 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 SIGLEC16A6NMB1 481 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 PDE2AO00408 941 aaPredicted RBP10.06□□□□□ -0.8
SCFD1-220ENST00000556486 MTSS1O43312 755 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 WFS1O76024 890 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 TM7SF2O76062 418 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 GFPT2O94808 682 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 TMCC1O94876 653 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 THBS1P07996 1170 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 PRKAR1AP10644 381 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 KRT3P12035 628 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 CTSEP14091 401 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 LIFP15018 202 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 NR1D1P20393 614 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 CCKBRP32239 447 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 HTR7P34969 479 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 RFC1P35251 1148 aaPredicted RBP10.06□□□□□ -0.8
SCFD1-220ENST00000556486 UQCRFS1P47985 274 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 BLKP51451 505 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 PPARDQ03181 441 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 RAD51Q06609 339 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 GRM3Q14832 879 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 C16orf72Q14CZ0 275 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 CDO1Q16878 200 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 TMEM52BQ4KMG9 183 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 HSP90AA4PQ58FG1 418 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 TTC7BQ86TV6 843 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 DTX1Q86Y01 620 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 FSTL5Q8N475 847 aaPredicted RBP10.06□□□□□ -0.8
SCFD1-220ENST00000556486 CCDC185Q8N715 623 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 NETO2Q8NC67 525 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 FAM172AQ8WUF8 416 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 RNF31Q96EP0 1072 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 KLHL32Q96NJ5 620 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 C11orf70Q9BRQ4 267 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 WRAP53Q9BUR4 548 aaKnown RBP10.06□□□□□ -0.8
SCFD1-220ENST00000556486 KLHL42Q9P2K6 505 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 PLEKHB1Q9UF11 243 aaPredicted RBP10.06□□□□□ -0.8
SCFD1-220ENST00000556486 SIK3Q9Y2K2 1263 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 CENPEQ02224 2701 aa10.06□□□□□ -0.8
SCFD1-220ENST00000556486 A1L4Q6 167 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 CFAP69A5D8W1 941 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 TMEM110-MUSTN1A8MSY1 372 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 B4DGG1 531 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 EPHB6O15197 1021 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 DUX1O43812 170 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 IGSF6O95976 241 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 CALB1P05937 261 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 EPHB2P29323 1055 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 NSFP46459 744 aaKnown RBP10.05□□□□□ -0.8
SCFD1-220ENST00000556486 ZNF143P52747 638 aaPredicted RBP10.05□□□□□ -0.8
SCFD1-220ENST00000556486 HK3P52790 923 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 MLLT10P55197 1068 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 POLR2FP61218 127 aaKnown RBP10.05□□□□□ -0.8
SCFD1-220ENST00000556486 ELP6Q0PNE2 266 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 IRF4Q15306 451 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 CLEC16AQ2KHT3 1053 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 ALG11Q2TAA5 492 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 AMZ1Q400G9 498 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 ATXN7L2Q5T6C5 722 aaPredicted RBP10.05□□□□□ -0.8
SCFD1-220ENST00000556486 WDR59Q6PJI9 974 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 RBM43Q6ZSC3 357 aaKnown RBP10.05□□□□□ -0.8
SCFD1-220ENST00000556486 MON1BQ7L1V2 547 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 SLFN11Q7Z7L1 901 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 IL22RA1Q8N6P7 574 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 SLC30A5Q8TAD4 765 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 C9orf43Q8TAL5 461 aaPredicted RBP10.05□□□□□ -0.8
SCFD1-220ENST00000556486 ZNF641Q96N77 438 aaPredicted RBP10.05□□□□□ -0.8
SCFD1-220ENST00000556486 PCDHB18PQ96TA0 734 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 MAGEB5Q9BZ81 275 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 NUP62CLQ9H1M0 184 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 ADNPQ9H2P0 1102 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 PDFQ9HBH1 243 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 DONSONQ9NYP3 566 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 CHMP5Q9NZZ3 219 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 ADAM22Q9P0K1 906 aa10.05□□□□□ -0.8
SCFD1-220ENST00000556486 SPTBN1Q01082 2364 aaKnown RBP10.05□□□□□ -0.8
SCFD1-220ENST00000556486 CELSR2Q9HCU4 2923 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 CREBBPQ92793 2442 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 LRRC10BA6NIK2 292 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms