RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 CCDC181Q5TID7 509 aa10.59□□□□□ -0.71
SHMT2-215ENST00000554656 OGFOD3Q6PK18 319 aa10.59□□□□□ -0.71
SHMT2-215ENST00000554656 GKN2Q86XP6 184 aa10.59□□□□□ -0.71
SHMT2-215ENST00000554656 CCNJLQ8IV13 435 aa10.59□□□□□ -0.71
SHMT2-215ENST00000554656 PGBD5Q8N414 524 aa10.59□□□□□ -0.71
SHMT2-215ENST00000554656 NIPA2Q8N8Q9 360 aa10.59□□□□□ -0.71
SHMT2-215ENST00000554656 OR56A4Q8NGH8 313 aa10.59□□□□□ -0.71
SHMT2-215ENST00000554656 ACTRT1Q8TDG2 376 aa10.59□□□□□ -0.71
SHMT2-215ENST00000554656 PTCD2Q8WV60 388 aaKnown RBP10.59□□□□□ -0.71
SHMT2-215ENST00000554656 COQ10AQ96MF6 247 aa10.59□□□□□ -0.71
SHMT2-215ENST00000554656 GFM1Q96RP9 751 aaKnown RBP10.59□□□□□ -0.71
SHMT2-215ENST00000554656 NAP1L3Q99457 506 aaPredicted RBP10.59□□□□□ -0.71
SHMT2-215ENST00000554656 CINPQ9BW66 212 aaPredicted RBP10.59□□□□□ -0.71
SHMT2-215ENST00000554656 LRRN3Q9H3W5 708 aa10.59□□□□□ -0.71
SHMT2-215ENST00000554656 SP110Q9HB58 689 aa10.59□□□□□ -0.71
SHMT2-215ENST00000554656 CWC15Q9P013 229 aaKnown RBP10.59□□□□□ -0.71
SHMT2-215ENST00000554656 B4GALT6Q9UBX8 382 aa10.59□□□□□ -0.71
SHMT2-215ENST00000554656 ATXN7L1Q9ULK2 861 aaPredicted RBP10.59□□□□□ -0.71
SHMT2-215ENST00000554656 RNF215Q9Y6U7 377 aa10.59□□□□□ -0.71
SHMT2-215ENST00000554656 B4DGG1 531 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 DDX3YO15523 660 aaKnown RBP10.58□□□□□ -0.72
SHMT2-215ENST00000554656 HTRA2O43464 458 aaPredicted RBP10.58□□□□□ -0.72
SHMT2-215ENST00000554656 PSTPIP1O43586 416 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 SPOPO43791 374 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 FUCA1P04066 466 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 TUBBP07437 444 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 ELFN1P0C7U0 828 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 CR2P20023 1033 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 COMTP21964 271 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 CCKBRP32239 447 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 ETV5P41161 510 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 INHBCP55103 352 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 ZFP36L1Q07352 338 aaKnown RBP10.58□□□□□ -0.72
SHMT2-215ENST00000554656 BCL2L1Q07817 233 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 IL10RBQ08334 325 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 SLC10A7Q0GE19 358 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 HLTFQ14527 1009 aaKnown RBP eCLIP10.58□□□□□ -0.72
SHMT2-215ENST00000554656 TGIF1Q15583 401 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 CNGA3Q16281 694 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 LRRC38Q5VT99 294 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 TXNRD3NBQ6F5E7 133 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 RAB11FIP2Q7L804 512 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 SPRED1Q7Z699 444 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 ZNF605Q86T29 641 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 SLITRK4Q8IW52 837 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 FBXO39Q8N4B4 442 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 ARL14Q8N4G2 192 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 Q8N9G6 341 aaPredicted RBP10.58□□□□□ -0.72
SHMT2-215ENST00000554656 SCG3Q8WXD2 468 aaKnown RBP10.58□□□□□ -0.72
SHMT2-215ENST00000554656 UBXN4Q92575 508 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 PSKH2Q96QS6 385 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 APPL1Q9UKG1 709 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 ACSL6Q9UKU0 697 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 PCDHA3Q9Y5H8 950 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 ST14Q9Y5Y6 855 aa10.58□□□□□ -0.72
SHMT2-215ENST00000554656 TLN1Q9Y490 2541 aaKnown RBP10.58□□□□□ -0.72
SHMT2-215ENST00000554656 A0A0U1RQS6 177 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 PRSS38A1L453 326 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 CCDC188H7C350 402 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 AGRPO00253 132 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 PGRMC1O00264 195 aaKnown RBP10.57□□□□□ -0.72
SHMT2-215ENST00000554656 CACNB4O00305 520 aaPredicted RBP10.57□□□□□ -0.72
SHMT2-215ENST00000554656 TNFRSF10CO14798 259 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 PRPSAP2O60256 369 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 TNFP01375 233 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 HOXC4P09017 264 aaPredicted RBP10.57□□□□□ -0.72
SHMT2-215ENST00000554656 GLB1P16278 677 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 ITIH1P19827 911 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 LHCGRP22888 699 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 AMPD1P23109 780 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 HCAR3P49019 387 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 SCNN1BP51168 640 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 MAZP56270 477 aaKnown RBP10.57□□□□□ -0.72
SHMT2-215ENST00000554656 AP1S1P61966 158 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 NSUN2Q08J23 767 aaKnown RBP eCLIP10.57□□□□□ -0.72
SHMT2-215ENST00000554656 TRAF2Q12933 501 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 RFTN1Q14699 578 aaPredicted RBP10.57□□□□□ -0.72
SHMT2-215ENST00000554656 LBRQ14739 615 aaKnown RBP10.57□□□□□ -0.72
SHMT2-215ENST00000554656 PPP2R5EQ16537 467 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 SMTNL2Q2TAL5 461 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 C14orf28Q4W4Y0 310 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 TMCO4Q5TGY1 634 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 PNCKQ6P2M8 343 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 HSD11B1LQ7Z5J1 315 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 TAF8Q7Z7C8 310 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 NRROSQ86YC3 692 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 PSTKQ8IV42 348 aaKnown RBP10.57□□□□□ -0.72
SHMT2-215ENST00000554656 RHOT1Q8IXI2 618 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 CBARPQ8N350 705 aaPredicted RBP10.57□□□□□ -0.72
SHMT2-215ENST00000554656 MMGT1Q8N4V1 131 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 FAM46DQ8NEK8 389 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 ATL2Q8NHH9 583 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 COG1Q8WTW3 980 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 SPOCK2Q92563 424 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 CCDC97Q96F63 343 aaPredicted RBP10.57□□□□□ -0.72
SHMT2-215ENST00000554656 CCNL2Q96S94 520 aaPredicted RBP10.57□□□□□ -0.72
SHMT2-215ENST00000554656 FRMD8Q9BZ67 464 aaPredicted RBP10.57□□□□□ -0.72
SHMT2-215ENST00000554656 WDR26Q9H7D7 661 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 CYP4F12Q9HCS2 524 aa10.57□□□□□ -0.72
SHMT2-215ENST00000554656 DONSONQ9NYP3 566 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms