RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 FGF3P11487 239 aaPredicted RBP12.81□□□□□ -0.36
PTCH1-221ENST00000550914 CCL4P13236 92 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 AK4P27144 223 aaPredicted RBP12.81□□□□□ -0.36
PTCH1-221ENST00000550914 IL1R2P27930 398 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 MMP13P45452 471 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 FASLGP48023 281 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 LRP8Q14114 963 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 ASIC2Q16515 512 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 ARMC12Q5T9G4 340 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 MARC1Q5VT66 337 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 ZNF765Q7L2R6 523 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 ZNF571Q7Z3V5 609 aaPredicted RBP12.81□□□□□ -0.36
PTCH1-221ENST00000550914 RAVER1Q8IY67 606 aaKnown RBP12.81□□□□□ -0.36
PTCH1-221ENST00000550914 NDUFAF2Q8N183 169 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 ATPAF2Q8N5M1 289 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 AGBL5Q8NDL9 886 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 RCBTB1Q8NDN9 531 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 TEKT4Q8WW24 435 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 NKD1Q969G9 470 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 ZNF653Q96CK0 615 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 CCDC74BQ96LY2 380 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 CSPG4P5Q96PW8 444 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 OR2M4Q96R27 311 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 FUCA2Q9BTY2 467 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 ASPSCR1Q9BZE9 553 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 ADNPQ9H2P0 1102 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 RTN4Q9NQC3 1192 aaKnown RBP12.81□□□□□ -0.36
PTCH1-221ENST00000550914 ETNK2Q9NVF9 386 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 GEMIN8Q9NWZ8 242 aaKnown RBP12.81□□□□□ -0.36
PTCH1-221ENST00000550914 PDP2Q9P2J9 529 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 ST14Q9Y5Y6 855 aa12.81□□□□□ -0.36
PTCH1-221ENST00000550914 RP1L1Q8IWN7 2480 aaPredicted RBP12.81□□□□□ -0.36
PTCH1-221ENST00000550914 GOLGA6CA6NDK9 693 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 GOLGA6BA6NDN3 693 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 B4E171 279 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 DDX3XO00571 662 aaKnown RBP eCLIP12.8□□□□□ -0.36
PTCH1-221ENST00000550914 PPM1DO15297 605 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 ARHGAP6O43182 974 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 PPFIA2O75334 1257 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 SOD1P00441 154 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 GOLGA6DP0CG33 693 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 THRAP10827 490 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 ZNF30P17039 623 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 WT1P19544 449 aaPredicted RBP12.8□□□□□ -0.36
PTCH1-221ENST00000550914 AMPD1P23109 780 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 CES1P23141 567 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 CSTF2P33240 577 aaKnown RBP eCLIP12.8□□□□□ -0.36
PTCH1-221ENST00000550914 TSPAN7P41732 249 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 ACTR1BP42025 376 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 GPR1P46091 355 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 RAB15P59190 212 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 ACTR1AP61163 376 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 PIGHQ14442 188 aaPredicted RBP12.8□□□□□ -0.36
PTCH1-221ENST00000550914 DENND2CQ68D51 928 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 TEX26Q8N6G2 289 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 PIH1D2Q8WWB5 315 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 PATE1Q8WXA2 126 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 HTR3CQ8WXA8 447 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 SLC12A9Q9BXP2 914 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 NAT10Q9H0A0 1025 aaKnown RBP12.8□□□□□ -0.36
PTCH1-221ENST00000550914 ISCUQ9H1K1 167 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 SLC25A18Q9H1K4 315 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 SUDS3Q9H7L9 328 aaPredicted RBP12.8□□□□□ -0.36
PTCH1-221ENST00000550914 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.8□□□□□ -0.36
PTCH1-221ENST00000550914 GOLGA6AQ9NYA3 693 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 KCNK4Q9NYG8 393 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 RCOR3Q9P2K3 495 aaPredicted RBP12.8□□□□□ -0.36
PTCH1-221ENST00000550914 DNPEPQ9ULA0 475 aa12.8□□□□□ -0.36
PTCH1-221ENST00000550914 PRRC2CQ9Y520 2896 aaKnown RBP12.79□□□□□ -0.36
PTCH1-221ENST00000550914 PYCARD-AS1I3L0S3 204 aa12.79□□□□□ -0.36
PTCH1-221ENST00000550914 AGRPO00253 132 aa12.79□□□□□ -0.36
PTCH1-221ENST00000550914 CAPN5O15484 640 aaPredicted RBP12.79□□□□□ -0.36
PTCH1-221ENST00000550914 FZD6O60353 706 aa12.79□□□□□ -0.36
PTCH1-221ENST00000550914 POLD2P49005 469 aa12.79□□□□□ -0.36
PTCH1-221ENST00000550914 ARSDP51689 593 aa12.79□□□□□ -0.36
PTCH1-221ENST00000550914 KLHL30Q0D2K2 578 aa12.79□□□□□ -0.36
PTCH1-221ENST00000550914 SMTNL2Q2TAL5 461 aa12.79□□□□□ -0.36
PTCH1-221ENST00000550914 PYCR3Q53H96 274 aa12.79□□□□□ -0.36
PTCH1-221ENST00000550914 ALG1LQ6GMV1 187 aa12.79□□□□□ -0.36
PTCH1-221ENST00000550914 TMEM71Q6P5X7 295 aa12.79□□□□□ -0.36
PTCH1-221ENST00000550914 TSPAN33Q86UF1 283 aa12.79□□□□□ -0.36
PTCH1-221ENST00000550914 NRSN1Q8IZ57 195 aa12.79□□□□□ -0.36
PTCH1-221ENST00000550914 AOPEPQ8N6M6 819 aa12.79□□□□□ -0.36
PTCH1-221ENST00000550914 NIPA2Q8N8Q9 360 aa12.79□□□□□ -0.36
PTCH1-221ENST00000550914 PTCD2Q8WV60 388 aaKnown RBP12.79□□□□□ -0.36
PTCH1-221ENST00000550914 AP2M1Q96CW1 435 aa12.79□□□□□ -0.36
PTCH1-221ENST00000550914 GBP4Q96PP9 640 aa12.79□□□□□ -0.36
PTCH1-221ENST00000550914 TEFMQ96QE5 360 aaKnown RBP12.79□□□□□ -0.36
PTCH1-221ENST00000550914 BPIFA3Q9BQP9 254 aa12.79□□□□□ -0.36
PTCH1-221ENST00000550914 ABCG8Q9H221 673 aa12.79□□□□□ -0.36
PTCH1-221ENST00000550914 PCDH18Q9HCL0 1135 aa12.79□□□□□ -0.36
PTCH1-221ENST00000550914 AMACRQ9UHK6 382 aa12.79□□□□□ -0.36
PTCH1-221ENST00000550914 TUBD1Q9UJT1 453 aa12.79□□□□□ -0.36
PTCH1-221ENST00000550914 USP9YO00507 2555 aaPredicted RBP12.78□□□□□ -0.36
PTCH1-221ENST00000550914 A0A0J9YYE9 177 aa12.78□□□□□ -0.36
PTCH1-221ENST00000550914 TRBC1P01850 177 aa12.78□□□□□ -0.36
PTCH1-221ENST00000550914 PDHA1P08559 390 aa12.78□□□□□ -0.36
PTCH1-221ENST00000550914 RARAP10276 462 aa12.78□□□□□ -0.36
PTCH1-221ENST00000550914 CSF2RBP32927 897 aa12.78□□□□□ -0.36
PTCH1-221ENST00000550914 UGT1A3P35503 534 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms