RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 TRIM74Q86UV6 250 aa16.28■□□□□ 0.2
VPS29-207ENST00000549970 NRROSQ86YC3 692 aa16.28■□□□□ 0.2
VPS29-207ENST00000549970 CNGA4Q8IV77 575 aa16.28■□□□□ 0.2
VPS29-207ENST00000549970 KIAA1524Q8TCG1 905 aa16.28■□□□□ 0.2
VPS29-207ENST00000549970 GPBAR1Q8TDU6 330 aa16.28■□□□□ 0.2
VPS29-207ENST00000549970 KCNE4Q8WWG9 221 aa16.28■□□□□ 0.2
VPS29-207ENST00000549970 SLC46A1Q96NT5 459 aa16.28■□□□□ 0.2
VPS29-207ENST00000549970 MAK16Q9BXY0 300 aaKnown RBP16.28■□□□□ 0.2
VPS29-207ENST00000549970 PCDH9Q9HC56 1237 aa16.28■□□□□ 0.2
VPS29-207ENST00000549970 SPATS2LQ9NUQ6 558 aaKnown RBP16.28■□□□□ 0.2
VPS29-207ENST00000549970 LRIT1Q9P2V4 623 aa16.28■□□□□ 0.2
VPS29-207ENST00000549970 ATXN7L1Q9ULK2 861 aaPredicted RBP16.28■□□□□ 0.2
VPS29-207ENST00000549970 SLC17A4Q9Y2C5 497 aa16.28■□□□□ 0.2
VPS29-207ENST00000549970 HYOU1Q9Y4L1 999 aa16.28■□□□□ 0.2
VPS29-207ENST00000549970 C3orf70A6NLC5 250 aaPredicted RBP16.27■□□□□ 0.2
VPS29-207ENST00000549970 AKR1B15C9JRZ8 316 aaPredicted RBP16.27■□□□□ 0.2
VPS29-207ENST00000549970 APOL1O14791 398 aa16.27■□□□□ 0.2
VPS29-207ENST00000549970 MTA2O94776 668 aa16.27■□□□□ 0.2
VPS29-207ENST00000549970 TNFSF15O95150 251 aa16.27■□□□□ 0.2
VPS29-207ENST00000549970 CLDN7O95471 211 aa16.27■□□□□ 0.2
VPS29-207ENST00000549970 PRLP01236 227 aa16.27■□□□□ 0.2
VPS29-207ENST00000549970 STC1P52823 247 aa16.27■□□□□ 0.2
VPS29-207ENST00000549970 INHBCP55103 352 aa16.27■□□□□ 0.2
VPS29-207ENST00000549970 MAZP56270 477 aaKnown RBP16.27■□□□□ 0.2
VPS29-207ENST00000549970 CXADRP78310 365 aa16.27■□□□□ 0.2
VPS29-207ENST00000549970 AP1B1Q10567 949 aa16.27■□□□□ 0.2
VPS29-207ENST00000549970 ZBTB17Q13105 803 aa16.27■□□□□ 0.2
VPS29-207ENST00000549970 ODF2Q5BJF6 829 aa16.27■□□□□ 0.2
VPS29-207ENST00000549970 IGF2-ASQ6U949 168 aa16.27■□□□□ 0.2
VPS29-207ENST00000549970 NPNTQ6UXI9 565 aa16.27■□□□□ 0.2
VPS29-207ENST00000549970 RFX6Q8HWS3 928 aa16.27■□□□□ 0.2
VPS29-207ENST00000549970 ARL14Q8N4G2 192 aa16.27■□□□□ 0.2
VPS29-207ENST00000549970 ZDHHC1Q8WTX9 485 aa16.27■□□□□ 0.2
VPS29-207ENST00000549970 RNF25Q96BH1 459 aaPredicted RBP16.27■□□□□ 0.2
VPS29-207ENST00000549970 LIN37Q96GY3 246 aaPredicted RBP16.27■□□□□ 0.2
VPS29-207ENST00000549970 AGAP2Q99490 1192 aa16.27■□□□□ 0.2
VPS29-207ENST00000549970 CEP41Q9BYV8 373 aa16.27■□□□□ 0.2
VPS29-207ENST00000549970 TRNAU1APQ9NX07 287 aaKnown RBP16.27■□□□□ 0.2
VPS29-207ENST00000549970 TAAR2Q9P1P5 351 aa16.27■□□□□ 0.2
VPS29-207ENST00000549970 APPL1Q9UKG1 709 aa16.27■□□□□ 0.2
VPS29-207ENST00000549970 DNPEPQ9ULA0 475 aa16.27■□□□□ 0.2
VPS29-207ENST00000549970 TMEM98Q9Y2Y6 226 aa16.27■□□□□ 0.2
VPS29-207ENST00000549970 ATRXP46100 2492 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 ZNF487B1APH4 448 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 AGRPO00253 132 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 INPP4BO15327 924 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 KLK10O43240 276 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 NUDT21O43809 227 aaKnown RBP16.26■□□□□ 0.19
VPS29-207ENST00000549970 FGF1P05230 155 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 IVLP07476 585 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 MMP2P08253 660 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 PNLIPP16233 465 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 RPL26P61254 145 aaKnown RBP16.26■□□□□ 0.19
VPS29-207ENST00000549970 DYNLT1P63172 113 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 CTBSQ01459 385 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 COL9A2Q14055 689 aaPredicted RBP16.26■□□□□ 0.19
VPS29-207ENST00000549970 SLC9A4Q6AI14 798 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 ADAMTSL4Q6UY14 1074 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 MARK2Q7KZI7 788 aaKnown RBP16.26■□□□□ 0.19
VPS29-207ENST00000549970 ZNF765Q7L2R6 523 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 SPRED1Q7Z699 444 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 FBXO39Q8N4B4 442 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 CNTD1Q8N815 330 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 TMEM74Q96NL1 305 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 ANP32EQ9BTT0 268 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 RIOK2Q9BVS4 552 aaKnown RBP16.26■□□□□ 0.19
VPS29-207ENST00000549970 STRADBQ9C0K7 418 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 CDH19Q9H159 772 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 SEPT10Q9P0V9 454 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 RPL26L1Q9UNX3 145 aaKnown RBP16.26■□□□□ 0.19
VPS29-207ENST00000549970 PLEKHM1Q9Y4G2 1056 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 ST14Q9Y5Y6 855 aa16.26■□□□□ 0.19
VPS29-207ENST00000549970 C1orf232A0A0U1RR37 186 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 EIF4E1BA6NMX2 242 aaKnown RBP16.25■□□□□ 0.19
VPS29-207ENST00000549970 CDRT15L2A8MXV6 281 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 TMX2-CTNND1H3BSU7 103 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 PLD2O14939 933 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 SPOPO43791 374 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 ECEL1O95672 775 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 ADCY8P40145 1251 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 ACTR1BP42025 376 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 SLC1A1P43005 524 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 ACTR1AP61163 376 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 IFI35P80217 286 aaPredicted RBP16.25■□□□□ 0.19
VPS29-207ENST00000549970 SKOR1P84550 965 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 TBX2Q13207 712 aaPredicted RBP16.25■□□□□ 0.19
VPS29-207ENST00000549970 BIRC2Q13490 618 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 GALNT3Q14435 633 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 PDK1Q15118 436 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 QPCTQ16769 361 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 LRRC38Q5VT99 294 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 BROXQ5VW32 411 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 B4GALNT4Q76KP1 1039 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 RAB11FIP2Q7L804 512 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 GPR155Q7Z3F1 870 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 VSIG1Q86XK7 387 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 RHOT1Q8IXI2 618 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 NRSN1Q8IZ57 195 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 PATE1Q8WXA2 126 aa16.25■□□□□ 0.19
VPS29-207ENST00000549970 AGAP3Q96P47 875 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms