RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 ZNF461Q8TAF7 563 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 SPDL1Q96EA4 605 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 MYRFLQ96LU7 910 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 KLF16Q9BXK1 252 aaPredicted RBP18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 KLHL4Q9C0H6 718 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 EBF3Q9H4W6 596 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 TFB2MQ9H5Q4 396 aaKnown RBP18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 CCDC167Q9P0B6 97 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 RAI2Q9Y5P3 530 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 FBP2O00757 339 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 CASQ2O14958 399 aaPredicted RBP18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 GPC4O75487 556 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 ABLIM3O94929 683 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 MYCP01106 439 aaPredicted RBP18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 CXCL10P02778 98 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 ME2P23368 584 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 PSMA3P25788 255 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 TRIP10Q15642 601 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 C19orf60Q96EN9 201 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 NSUN5Q96P11 429 aaKnown RBP18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 CYP2S1Q96SQ9 504 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 MRPL1Q9BYD6 325 aaKnown RBP18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 MUC3BQ9H195 1237 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 FBRSL1Q9HCM7 1045 aaKnown RBP18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 ZDHHC7Q9NXF8 308 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 GALPQ9UBC7 116 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 PSMD13Q9UNM6 376 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 PCDHGA7Q9Y5G6 932 aa18.48■□□□□ 0.55
PRPF40B-208ENST00000548436 C2orf81A6NN90 581 aa18.47■□□□□ 0.55
PRPF40B-208ENST00000548436 SCAMP3O14828 347 aaKnown RBP18.47■□□□□ 0.55
PRPF40B-208ENST00000548436 SNAP91O60641 907 aa18.47■□□□□ 0.55
PRPF40B-208ENST00000548436 SRP72O76094 671 aaKnown RBP18.47■□□□□ 0.55
PRPF40B-208ENST00000548436 GSTA3Q16772 222 aa18.47■□□□□ 0.55
PRPF40B-208ENST00000548436 CLYBLQ8N0X4 340 aa18.47■□□□□ 0.55
PRPF40B-208ENST00000548436 PCDH20Q8N6Y1 951 aaKnown RBP18.47■□□□□ 0.55
PRPF40B-208ENST00000548436 SEZ6LQ9BYH1 1024 aa18.47■□□□□ 0.55
PRPF40B-208ENST00000548436 PPP1R12CQ9BZL4 782 aa18.47■□□□□ 0.55
PRPF40B-208ENST00000548436 UTP6Q9NYH9 597 aaKnown RBP18.47■□□□□ 0.55
PRPF40B-208ENST00000548436 DNAJC15Q9Y5T4 150 aa18.47■□□□□ 0.55
PRPF40B-208ENST00000548436 A0A0U1RQS6 177 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 MAGEA13PA6NCF6 341 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 ANKRD66B4E2M5 251 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 NDUFS3O75489 264 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 ATXN3P54252 364 aaPredicted RBP18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 AQP4P55087 323 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 FOXA1P55317 472 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 MRPS22P82650 360 aaKnown RBP18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 LRP8Q14114 963 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 REP15Q6BDI9 236 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 PSAPL1Q6NUJ1 521 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 PIANPQ8IYJ0 282 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 FAM156AQ8NDB6 213 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 BHLHE22Q8NFJ8 381 aaPredicted RBP18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 OR9I1Q8NGQ6 314 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 PPP2R3CQ969Q6 453 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 KIAA1191Q96A73 305 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 BIRC8Q96P09 236 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 NR1H4Q96RI1 486 aaPredicted RBP18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 DERL2Q9GZP9 239 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 UNC93B1Q9H1C4 597 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 HIPK3Q9H422 1215 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 MID1IP1Q9NPA3 183 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 SMPD4Q9NXE4 827 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 CACNA2D2Q9NY47 1150 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 TAS2R13Q9NYV9 303 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 YIPF1Q9Y548 306 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 PTGDR2Q9Y5Y4 395 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 COL4A6Q14031 1691 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 ACOT8O14734 319 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 TMCC1O94876 653 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 C1RP00736 705 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 FGF4P08620 206 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 ALDOCP09972 364 aaKnown RBP18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 UBTFL6P0CB48 400 aaPredicted RBP18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 TCN1P20061 433 aaPredicted RBP18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 LPOP22079 712 aaPredicted RBP18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 PAX7P23759 505 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 PSME3P61289 254 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 TRAF2Q12933 501 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 STX5Q13190 355 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 RAB44Q7Z6P3 723 aaPredicted RBP18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 PQLC1Q8N2U9 271 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 TCF12Q99081 682 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 GPR21Q99679 349 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 SLC30A3Q99726 388 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 VCX3BQ9H321 246 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 SYTL2Q9HCH5 934 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 BPIFA1Q9NP55 256 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 MRGBPQ9NV56 204 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 SCOCQ9UIL1 159 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 FKBPLQ9UIM3 349 aa18.46■□□□□ 0.55
PRPF40B-208ENST00000548436 OBSL1O75147 1896 aa18.46■□□□□ 0.54
PRPF40B-208ENST00000548436 LCHNA4D1U4 455 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 KERAO60938 352 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 BCAS2O75934 225 aaPredicted RBP18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 GFAPP14136 432 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 CES1P23141 567 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 MZF1P28698 734 aaPredicted RBP18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 ALDH1A3P47895 512 aa18.45■□□□□ 0.54
PRPF40B-208ENST00000548436 ATN1P54259 1190 aaPredicted RBP18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms