RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 CCKBRP32239 447 aa13.3□□□□□ -0.28
CPSF6-204ENST00000547486 GPR1P46091 355 aa13.3□□□□□ -0.28
CPSF6-204ENST00000547486 OR1D5P58170 312 aa13.3□□□□□ -0.28
CPSF6-204ENST00000547486 TIGD7Q6NT04 549 aaPredicted RBP13.3□□□□□ -0.28
CPSF6-204ENST00000547486 DOK6Q6PKX4 331 aa13.3□□□□□ -0.28
CPSF6-204ENST00000547486 TRIM74Q86UV6 250 aa13.3□□□□□ -0.28
CPSF6-204ENST00000547486 SLITRK4Q8IW52 837 aa13.3□□□□□ -0.28
CPSF6-204ENST00000547486 OR8K1Q8NGG5 319 aa13.3□□□□□ -0.28
CPSF6-204ENST00000547486 SNRNP27Q8WVK2 155 aaKnown RBP13.3□□□□□ -0.28
CPSF6-204ENST00000547486 PATE1Q8WXA2 126 aa13.3□□□□□ -0.28
CPSF6-204ENST00000547486 CTNNBL1Q8WYA6 563 aaPredicted RBP13.3□□□□□ -0.28
CPSF6-204ENST00000547486 AP2M1Q96CW1 435 aa13.3□□□□□ -0.28
CPSF6-204ENST00000547486 SCARF2Q96GP6 870 aaPredicted RBP13.3□□□□□ -0.28
CPSF6-204ENST00000547486 TMEM74Q96NL1 305 aa13.3□□□□□ -0.28
CPSF6-204ENST00000547486 DNAJC7Q99615 494 aa13.3□□□□□ -0.28
CPSF6-204ENST00000547486 CHP1Q99653 195 aa13.3□□□□□ -0.28
CPSF6-204ENST00000547486 TDRD1Q9BXT4 1180 aaKnown RBP13.3□□□□□ -0.28
CPSF6-204ENST00000547486 SEMA6CQ9H3T2 930 aa13.3□□□□□ -0.28
CPSF6-204ENST00000547486 DTLQ9NZJ0 730 aa13.3□□□□□ -0.28
CPSF6-204ENST00000547486 TTLL3Q9Y4R7 772 aa13.3□□□□□ -0.28
CPSF6-204ENST00000547486 ANKRD36A6QL64 1941 aa13.3□□□□□ -0.28
CPSF6-204ENST00000547486 ATMQ13315 3056 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 C3orf70A6NLC5 250 aaPredicted RBP13.29□□□□□ -0.28
CPSF6-204ENST00000547486 TMX2-CTNND1H3BSU7 103 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 CLDN7O95471 211 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 JCHAINP01591 159 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 IVLP07476 585 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 MMP2P08253 660 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 KRT7P08729 469 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 TMEM253P0C7T8 217 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 ITIH1P19827 911 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 CES1P23141 567 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 MLLT3P42568 568 aaPredicted RBP13.29□□□□□ -0.28
CPSF6-204ENST00000547486 STC1P52823 247 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 UCNP55089 124 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 VAC14Q08AM6 782 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 ILF3Q12906 894 aaKnown RBP eCLIP13.29□□□□□ -0.281e-6■■■■□ 22.3
CPSF6-204ENST00000547486 EIF3IQ13347 325 aaKnown RBP13.29□□□□□ -0.28
CPSF6-204ENST00000547486 MESDQ14696 234 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 TGIF1Q15583 401 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 KIF26BQ2KJY2 2108 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 AMZ1Q400G9 498 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 SLC30A9Q6PML9 568 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 ADAMTSL4Q6UY14 1074 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 ZNF574Q6ZN55 896 aaPredicted RBP13.29□□□□□ -0.28
CPSF6-204ENST00000547486 USP53Q70EK8 1073 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 ZNF438Q7Z4V0 828 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 NLRP8Q86W28 1048 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 MAP7D3Q8IWC1 876 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 NAGSQ8N159 534 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 CNTD1Q8N815 330 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 LSM14AQ8ND56 463 aaKnown RBP13.29□□□□□ -0.28
CPSF6-204ENST00000547486 SLC35G2Q8TBE7 412 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 KIAA1524Q8TCG1 905 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 RNF157Q96PX1 679 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 WDR24Q96S15 920 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 RIOK2Q9BVS4 552 aaKnown RBP13.29□□□□□ -0.28
CPSF6-204ENST00000547486 GSDMCQ9BYG8 508 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 STRADBQ9C0K7 418 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 RDH14Q9HBH5 336 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 CNOT6Q9ULM6 557 aaKnown RBP13.29□□□□□ -0.28
CPSF6-204ENST00000547486 LOXL2Q9Y4K0 774 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 PCDHGA7Q9Y5G6 932 aa13.29□□□□□ -0.28
CPSF6-204ENST00000547486 PCYT1BQ9Y5K3 369 aaPredicted RBP13.29□□□□□ -0.28
CPSF6-204ENST00000547486 KALRNO60229 2985 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 CAPN8A6NHC0 703 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 KCNK1O00180 336 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 PPM1DO15297 605 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 INPP4BO15327 924 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 CD1CP29017 333 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 ALDH4A1P30038 563 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 MAN1A1P33908 653 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 ETV5P41161 510 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 EPHB1P54762 984 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 PYCR3Q53H96 274 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 MARK2Q7KZI7 788 aaKnown RBP13.28□□□□□ -0.28
CPSF6-204ENST00000547486 CCDC13Q8IYE1 715 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 NDUFAF2Q8N183 169 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 ZNF843Q8N446 348 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 PLD5Q8N7P1 536 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 CCNYQ8ND76 341 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 LPCAT1Q8NF37 534 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 HDAC11Q96DB2 347 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 CCDC97Q96F63 343 aaPredicted RBP13.28□□□□□ -0.28
CPSF6-204ENST00000547486 COX14Q96I36 57 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 PCDH9Q9HC56 1237 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 SPTLC3Q9NUV7 552 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 PISDQ9UG56 409 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 AMACRQ9UHK6 382 aa13.28□□□□□ -0.28
CPSF6-204ENST00000547486 SHROOM3Q8TF72 1996 aa13.27□□□□□ -0.28
CPSF6-204ENST00000547486 TRBV23OR9-2A0A075B6M9 112 aa13.27□□□□□ -0.29
CPSF6-204ENST00000547486 SSU72P8A0A1W2PR75 194 aa13.27□□□□□ -0.29
CPSF6-204ENST00000547486 RHPN2P1A8MT19 583 aa13.27□□□□□ -0.29
CPSF6-204ENST00000547486 K7ENP7 123 aa13.27□□□□□ -0.29
CPSF6-204ENST00000547486 ERVH48-1M5A8F1 160 aa13.27□□□□□ -0.29
CPSF6-204ENST00000547486 AKR1B10O60218 316 aa13.27□□□□□ -0.29
CPSF6-204ENST00000547486 EML2O95834 649 aa13.27□□□□□ -0.29
CPSF6-204ENST00000547486 JMJD7P0C870 316 aa13.27□□□□□ -0.29
CPSF6-204ENST00000547486 KRT10P13645 584 aa13.27□□□□□ -0.29
CPSF6-204ENST00000547486 ZNF30P17039 623 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms