RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	POLN	Q7Z5Q5	900 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	SLCO6A1	Q86UG4	719 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	VSTM4	Q8IW00	320 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	MRPL41	Q8IXM3	137 aa	Known RBP	7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	CHCHD4	Q8N4Q1	142 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	PNPLA1	Q8N8W4	532 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	ZNF564	Q8TBZ8	553 aa	Predicted RBP	7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	FAM71B	Q8TC56	605 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	HSPH1	Q92598	858 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	KLK6	Q92876	244 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	ZNF641	Q96N77	438 aa	Predicted RBP	7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	ZNF599	Q96NL3	588 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	LENG8	Q96PV6	779 aa	Predicted RBP	7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	CSPG4P5	Q96PW8	444 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	KLF6	Q99612	283 aa	Predicted RBP	7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	CINP	Q9BW66	212 aa	Predicted RBP	7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	C1QTNF7	Q9BXJ2	289 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	CALN1	Q9BXU9	219 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	KLHL11	Q9NVR0	708 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	UVRAG	Q9P2Y5	699 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	ITM2B	Q9Y287	266 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	HS3ST3A1	Q9Y663	406 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	ZNF106	Q9H2Y7	1883 aa	Known RBP	7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	UNC13C	Q8NB66	2214 aa		7.74	□□□□□ -1.17
SNHG1-223	ENST00000545440	SPTY2D1-AS1	A0A0U1RR47	76 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	POM121B	A6NF01	834 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	IGLON5	A6NGN9	336 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	TOR1B	O14657	336 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	FPGT	O14772	594 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	RAD51B	O15315	384 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	INSIG1	O15503	277 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	SDC3	O75056	442 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	MFAP3L	O75121	409 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	PIAS2	O75928	621 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	TM7SF2	O76062	418 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	PIGN	O95427	931 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	PAK4	O96013	591 aa	Predicted RBP	7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	C1S	P09871	688 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	H2AFZ	P0C0S5	128 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	NME1	P15531	152 aa	Known RBP	7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	XPA	P23025	273 aa	Predicted RBP	7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	MAN1A1	P33908	653 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	HSPA9	P38646	679 aa	Known RBP	7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	MMP12	P39900	470 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	CCNF	P41002	786 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	GATA4	P43694	442 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	RGR	P47804	291 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	ACADVL	P49748	655 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	RENBP	P51606	427 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	CLDN2	P57739	230 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	PFN3	P60673	137 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	AP1S1	P61966	158 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	NSUN2	Q08J23	767 aa	Known RBP eCLIP	7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	SGCG	Q13326	291 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	ILK	Q13418	452 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	FXN	Q16595	210 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	HADH	Q16836	314 aa	Known RBP	7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	UGP2	Q16851	508 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	ASTE1	Q2TB18	679 aa	Predicted RBP	7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	LRRC73	Q5JTD7	316 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	PRAMEF14	Q5SWL7	426 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	CFAP58	Q5T655	872 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	TXNRD3NB	Q6F5E7	133 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	ERAP2	Q6P179	960 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	CCNI2	Q6ZMN8	369 aa	Predicted RBP	7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440		Q6ZSR6	202 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	H2AFV	Q71UI9	128 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	TMPRSS7	Q7RTY8	843 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	TTC7B	Q86TV6	843 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	PARG	Q86W56	976 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	LSR	Q86X29	649 aa	Predicted RBP	7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	GALNT15	Q8N3T1	639 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	ATPAF2	Q8N5M1	289 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	C19orf47	Q8N9M1	422 aa	Known RBP	7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	NETO2	Q8NC67	525 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	OR8K1	Q8NGG5	319 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	CXorf40A	Q8TE69	158 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	ISL2	Q96A47	359 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	CENPT	Q96BT3	561 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	ECHDC3	Q96DC8	303 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	FAM46A	Q96IP4	442 aa	Known RBP	7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	CNDP2	Q96KP4	475 aa	Known RBP	7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	BMF	Q96LC9	184 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	CCDC74B	Q96LY2	380 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	PSKH2	Q96QS6	385 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	ZNF670	Q9BS34	389 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	DEF6	Q9H4E7	631 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	GSX1	Q9H4S2	264 aa	Predicted RBP	7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	ATP13A3	Q9H7F0	1226 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	PCDH18	Q9HCL0	1135 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	ABHD10	Q9NUJ1	306 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	ZNHIT6	Q9NWK9	470 aa	Known RBP	7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	IPO11	Q9UI26	975 aa	Known RBP	7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	ATP8A1	Q9Y2Q0	1164 aa		7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	ANKRD11	Q6UB99	2663 aa	Predicted RBP	7.73	□□□□□ -1.17
SNHG1-223	ENST00000545440	FAM208B	Q5VWN6	2430 aa		7.72	□□□□□ -1.17
SNHG1-223	ENST00000545440	PKD1L2	Q7Z442	2459 aa		7.72	□□□□□ -1.17
SNHG1-223	ENST00000545440	CFAP69	A5D8W1	941 aa		7.72	□□□□□ -1.17
SNHG1-223	ENST00000545440	SLC22A31	A6NKX4	558 aa		7.72	□□□□□ -1.17

Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms