RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 PTGR2Q8N8N7 351 aaPredicted RBP13.7□□□□□ -0.22
VPS33A-208ENST00000543633 GRIN3AQ8TCU5 1115 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 BORCS5Q969J3 196 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 TMEM125Q96AQ2 219 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 PTERQ96BW5 349 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 PARK7Q99497 189 aaKnown RBP13.7□□□□□ -0.22
VPS33A-208ENST00000543633 RTP3Q9BQQ7 232 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 PALMDQ9NP74 551 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 SLC52A3Q9NQ40 469 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 SMPD3Q9NY59 655 aaPredicted RBP13.7□□□□□ -0.22
VPS33A-208ENST00000543633 AURKCQ9UQB9 309 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 GIT1Q9Y2X7 761 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 RNF103-CHMP3A0A140T963 221 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 TCRBV5S2A0A599 114 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 PIP5K1BO14986 540 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 CLOCKO15516 846 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 PRR35P0CG20 571 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 NELFEP18615 380 aaKnown RBP13.69□□□□□ -0.22
VPS33A-208ENST00000543633 CLCNKBP51801 687 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 BTG3Q14201 252 aaPredicted RBP13.69□□□□□ -0.22
VPS33A-208ENST00000543633 LYSMD3Q7Z3D4 306 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 GPR142Q7Z601 462 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 SPPL2CQ8IUH8 684 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 CMTR2Q8IYT2 770 aaKnown RBP13.69□□□□□ -0.22
VPS33A-208ENST00000543633 TEX26Q8N6G2 289 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 VPS50Q96JG6 964 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 PLEKHG4BQ96PX9 1271 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 KATNAL1Q9BW62 490 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 MID1IP1Q9NPA3 183 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 PFDN4Q9NQP4 134 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 TBC1D23Q9NUY8 699 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 RHBDL2Q9NX52 303 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 ANAPC2Q9UJX6 822 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 ZNF510Q9Y2H8 683 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 PLXNA3P51805 1871 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 GBF1Q92538 1859 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 TRIP12Q14669 1992 aaPredicted RBP13.69□□□□□ -0.22
VPS33A-208ENST00000543633 DOCK4Q8N1I0 1966 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 ATP6AP2A0A1C7CYW4 349 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 A0A1W2PP18 115 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 DYNC1LI2O43237 492 aaPredicted RBP13.69□□□□□ -0.22
VPS33A-208ENST00000543633 TREHO43280 583 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 EEDO75530 441 aaKnown RBP13.69□□□□□ -0.22
VPS33A-208ENST00000543633 ATP6AP2O75787 350 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 CPNE6O95741 557 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 SLC2A3P11169 496 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 BDNFP23560 247 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 SPIDRQ14159 915 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 RCAN2Q14206 197 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 PCSK7Q16549 785 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 FAM110CQ1W6H9 321 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 MRNIPQ6NTE8 343 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 C3orf58Q8NDZ4 430 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 HDAC10Q969S8 669 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 SERPINB11Q96P15 392 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 ATOH8Q96SQ7 321 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 SEZ6LQ9BYH1 1024 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 ATXN3LQ9H3M9 355 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 CXorf21Q9HAI6 301 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 GPBP1L1Q9HC44 474 aaPredicted RBP13.69□□□□□ -0.22
VPS33A-208ENST00000543633 FAM105AQ9NUU6 356 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 PKD2L2Q9NZM6 624 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 EBF1Q9UH73 591 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 POLG2Q9UHN1 485 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 OAZ3Q9UMX2 235 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 FADS3Q9Y5Q0 445 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 GPR45Q9Y5Y3 372 aa13.69□□□□□ -0.22
VPS33A-208ENST00000543633 hCG_2014768A0A024R1R8 64 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 C17orf102A2RUQ5 167 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 MANSC4A6NHS7 340 aaPredicted RBP13.68□□□□□ -0.22
VPS33A-208ENST00000543633 ZSCAN9O15535 394 aaPredicted RBP13.68□□□□□ -0.22
VPS33A-208ENST00000543633 KERAO60938 352 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 SLC10A3P09131 477 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 GNAO1P09471 354 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 ZNF37AP17032 561 aaPredicted RBP13.68□□□□□ -0.22
VPS33A-208ENST00000543633 RHOQP17081 205 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 JUNBP17275 347 aaPredicted RBP13.68□□□□□ -0.22
VPS33A-208ENST00000543633 HTR1EP28566 365 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 RPS9P46781 194 aaKnown RBP13.68□□□□□ -0.22
VPS33A-208ENST00000543633 KCNC1P48547 511 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 HLCSP50747 726 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 SFSWAPQ12872 951 aaKnown RBP13.68□□□□□ -0.22
VPS33A-208ENST00000543633 LCP2Q13094 533 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 VPS26BQ4G0F5 336 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 PITRM1Q5JRX3 1037 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 MARC1Q5VT66 337 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 MSANTD2Q6P1R3 559 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 PROSER1Q86XN7 944 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 OR6P1Q8NGX9 317 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 C1QTNF3Q9BXJ4 246 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 BRINP2Q9C0B6 783 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 NOL6Q9H6R4 1146 aaKnown RBP13.68□□□□□ -0.22
VPS33A-208ENST00000543633 RPF2Q9H7B2 306 aaKnown RBP13.68□□□□□ -0.22
VPS33A-208ENST00000543633 LIN28AQ9H9Z2 209 aaKnown RBP13.68□□□□□ -0.22
VPS33A-208ENST00000543633 NDFIP2Q9NV92 336 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 AIG1Q9NVV5 245 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 TIMM13Q9Y5L4 95 aaPredicted RBP13.68□□□□□ -0.22
VPS33A-208ENST00000543633 HS3ST4Q9Y661 456 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 LOC285095A0A1B0GVY8 99 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 H3BMQ9 156 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms