RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	ZNF140	P52738	457 aa	Predicted RBP	10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	PRAME	P78395	509 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	CREB5	Q02930	508 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	TCF15	Q12870	199 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	IRF4	Q15306	451 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	CHRNA6	Q15825	494 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	ZRANB3	Q5FWF4	1079 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	FAM151B	Q6UXP7	276 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	TAS2R42	Q7RTR8	314 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	CYP2U1	Q7Z449	544 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	RAVER1	Q8IY67	606 aa	Known RBP	10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	TP53I13	Q8NBR0	393 aa	Predicted RBP	10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	FBXO36	Q8NEA4	188 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	HDAC10	Q969S8	669 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	ZNF669	Q96BR6	464 aa	Predicted RBP	10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	LRRC39	Q96DD0	335 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	ZC3H10	Q96K80	434 aa	Known RBP	10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	SIGLEC10	Q96LC7	697 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	TBATA	Q96M53	351 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	ZNF778	Q96MU6	729 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	SLC6A18	Q96N87	628 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	FMO2	Q99518	471 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	EBNA1BP2	Q99848	306 aa	Known RBP	10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	NAT9	Q9BTE0	207 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	KIFC1	Q9BW19	673 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	TSPYL1	Q9H0U9	437 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	SUDS3	Q9H7L9	328 aa	Predicted RBP	10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	EBF2	Q9HAK2	575 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	MRM3	Q9HC36	420 aa	Known RBP	10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	IL26	Q9NPH9	171 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	MBNL1	Q9NR56	388 aa	Known RBP	10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	ZDHHC18	Q9NUE0	388 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	NLE1	Q9NVX2	485 aa	Predicted RBP	10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	SLC2A6	Q9UGQ3	507 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	ZC3H7B	Q9UGR2	993 aa	Known RBP	10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	APPL1	Q9UKG1	709 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	HCN4	Q9Y3Q4	1203 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	HS3ST3A1	Q9Y663	406 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	SLC30A1	Q9Y6M5	507 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	RPS6KL1	Q9Y6S9	549 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	CUL9	Q8IWT3	2517 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	CKAP5	Q14008	2032 aa		10.12	□□□□□ -0.79
CPSF7-221	ENST00000543545	ATXN2	Q99700	1313 aa	Known RBP	10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	FAM237B	A0A1B0GVD1	139 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	INPP4B	O15327	924 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	BCAT2	O15382	392 aa	Predicted RBP	10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	UGT1A9	O60656	530 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	TTC4	O95801	387 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	PYGL	P06737	847 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	GM2A	P17900	193 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	UGT1A6	P19224	532 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	ITGAL	P20701	1170 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	UGT1A1	P22309	533 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	UGT1A4	P22310	534 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	MCM3	P25205	808 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	MC4R	P32245	332 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	UGT1A3	P35503	534 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	UGT1A5	P35504	534 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	MAGEA4	P43358	317 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	ARSD	P51689	593 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	C21orf59	P57076	290 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	DCDC1	P59894	354 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	RACK1	P63244	317 aa	Known RBP	10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	THOC5	Q13769	683 aa	Known RBP	10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	INPP5A	Q14642	412 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	SMAD1	Q15797	465 aa	Known RBP	10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	ANKRD20A4	Q4UJ75	823 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	ARMC3	Q5W041	872 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	PNCK	Q6P2M8	343 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	CAPN12	Q6ZSI9	719 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545		Q6ZSR6	202 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	ZNF765	Q7L2R6	523 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	PTAR1	Q7Z6K3	402 aa	Predicted RBP	10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	CCNJL	Q8IV13	435 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	IGDCC3	Q8IVU1	814 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	AGGF1	Q8N302	714 aa	eCLIP	10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	TRAM1L1	Q8N609	369 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	PLA2G15	Q8NCC3	412 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	DENND6B	Q8NEG7	585 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	GDAP1	Q8TB36	358 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	ZNF398	Q8TD17	642 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	DNASE2B	Q8WZ79	361 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	SKA1	Q96BD8	255 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	CENPT	Q96BT3	561 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	MFSD3	Q96ES6	412 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	CDKN2AIPNL	Q96HQ2	116 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	LENG8	Q96PV6	779 aa	Predicted RBP	10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	PLEKHG4B	Q96PX9	1271 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	AGAP2	Q99490	1192 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	KLF6	Q99612	283 aa	Predicted RBP	10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	TRIM56	Q9BRZ2	755 aa	Known RBP	10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	ZSCAN5A	Q9BUG6	496 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	FAM96A	Q9H5X1	160 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	ASB8	Q9H765	288 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	ANKZF1	Q9H8Y5	726 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	UGT1A7	Q9HAW7	530 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	UGT1A10	Q9HAW8	530 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	UGT1A8	Q9HAW9	530 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	PPAN	Q9NQ55	473 aa	Known RBP	10.11	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms